Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00609 ATGCCAAAAATAGTGCTGAAAGCAGGAAGTAGACCTCCATGGGTGGGTTTGGCAGCGGCCGTTTGGGTGGAATTTGGGGCTGGAAGTGCCTACAACTTCCCACTCTATTCTCCTCTTCTTAAATCTGTACTGGGTTATAATCAGCAGCAGGTGACGATCCTCGGAGTGGCTAATGATGTTGGGGAGAGCGTGGGTTTGCTTCCTGGAATTGCCTGCAATAAGTTTCCGCCATGGGCGGTGCTTTTGGTCGGTCTCTTATTCTGTTTCGTGGGCTATGGTGTTATTTGGCTTGCTGTTAGCAAGACTGTCTCCAGTATTCCTTATTGGCTGCTATGGATCACCCTTTGTATTGCCACAAACAGCAATGCCTGGTTTGGGACGGCCGTGCTCGTCACCAACATGAGGAATTTTCCTCTTAGTCGCGGCACTGTTGCCGGGATTCTTAAAGGTTACGTTGGGATTAGTGCTGCAATTTACACTGTCATTTTCAATATGGTGCTTAAAGCGTCTGCACTTCATCTTCTGTTGTTTCTCACTATCGGGATTCCAATTTTATGCTTGGCCATGATGTACTTTGTTCGCCCTTGTACTCCTGCTTCTGGAGAAGACTCTTCTGAGCATGTCCATTTTCTTTTCACTCAAGCTGCTAGTGTTTTGGTCGCTATATTTGTTCTTGCCTCTACCGTTGTTTATGACACAACCTCTTTAAATGATGCAATTTCGTACACTTTAGTCGTGATAATGGTTATTCTGATGATGGCTCCACTCACAATTCCTGTTAAAATGACGTTGTTTCCGAAGAGATCGGTAGAGAGAGTGGATTCTTCAGATCCCCTCATTCATGGAGAAGAGGATTCAACCCAAAATAATTCGTTATTGGTGCCATCTTCCTCGGCCGCTGTGCTTGGGAGTTTTCACGAGGAGGATGACGATTCAGATGTCCAAACACTTCTTGCGGTGGGAGAGGGGGCCGTGAAAAAGAAGAGGAGGCCCAAAAGAGGAGAAGATTTCAATTTTCGTCAGGCTATCGTTAAAGCCGATTTTTGGCTGCTTTGGTTTGTATACTTTCTCGGTGTTGGTTCGGGTGTGACTGTCCTCAATAACCTGTCTCAAATTGGGGTTGCGTTAGGCGTTGATGACACCACATTGCTTTTGGCTAGCTTCAGTTTCTGCAATTTTGTCGGTCGACTTGGCTCCGGTGCCGTTTCTGAACACTTTGTCAGGTCAAGAATGCTTCCGCGGCCGGTGTGGATGATATGCTCTCTAATAATCATGATTGTAGCTTTCCTTCTCTATGCATCTGCCCTCTCTGGTACTCTCTATATTTCCACTGCGCTGCTCGGAATCTGTTATGGTGTTCTATATTCTACGACGGTCCCAACCGTATCCGAAATTTTTGGGCTCAAACATTTCGGAGTAATATACAATTGTGTGCAACTTGGCAATCCAATTGGTGCGTTGATTTTTTCGGCTATACTTGCTGGATCCGTGTATGACGATCAAGCTGCTAAGCAAGGATCAACCACTTGCATTGGAGCGGAATGCTTCAGGTTGACATTCCTGATTCTTGCCGGAGTTTGTGGATTAGGTACGATCTTAAGTGTGATTCTGACACTTAGAATAAGGCCAGTCTATCAAATGCTATACTCTGGTGGATCTTTCCGGCTGCCTCAAACCTCCGGCCACTGA 1689 46.0 MPKIVLKAGSRPPWVGLAAAVWVEFGAGSAYNFPLYSPLLKSVLGYNQQQVTILGVANDVGESVGLLPGIACNKFPPWAVLLVGLLFCFVGYGVIWLAVSKTVSSIPYWLLWITLCIATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGISAAIYTVIFNMVLKASALHLLLFLTIGIPILCLAMMYFVRPCTPASGEDSSEHVHFLFTQAASVLVAIFVLASTVVYDTTSLNDAISYTLVVIMVILMMAPLTIPVKMTLFPKRSVERVDSSDPLIHGEEDSTQNNSLLVPSSSAAVLGSFHEEDDDSDVQTLLAVGEGAVKKKRRPKRGEDFNFRQAIVKADFWLLWFVYFLGVGSGVTVLNNLSQIGVALGVDDTTLLLASFSFCNFVGRLGSGAVSEHFVRSRMLPRPVWMICSLIIMIVAFLLYASALSGTLYISTALLGICYGVLYSTTVPTVSEIFGLKHFGVIYNCVQLGNPIGALIFSAILAGSVYDDQAAKQGSTTCIGAECFRLTFLILAGVCGLGTILSVILTLRIRPVYQMLYSGGSFRLPQTSGH 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24407476 24409874 + Bda008950.1 Bda12g00609 17624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00609 562 SUPERFAMILY MFS general substrate transporter 221 543 IPR036259 -
Bda12g00609 562 Gene3D MFS general substrate transporter like domains 6 269 IPR036259 -
Bda12g00609 562 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 562 - -
Bda12g00609 562 SUPERFAMILY MFS general substrate transporter 7 197 IPR036259 -
Bda12g00609 562 CDD MFS_Mch1p_like 12 531 - -
Bda12g00609 562 Pfam Major Facilitator Superfamily 352 538 IPR011701 GO:0022857|GO:0055085
Bda12g00609 562 Pfam Nodulin-like 13 260 IPR010658 -
Bda12g00609 562 Gene3D MFS general substrate transporter like domains 303 552 IPR036259 -
Bda12g00609 562 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01944 Bda-Chr1:55822860 Bda12g00609 Bda-Chr12:24407476 0 dispersed
Bda01g01946 Bda-Chr1:55847066 Bda12g00609 Bda-Chr12:24407476 0 dispersed
Bda12g00609 Bda-Chr12:24407476 Bda15g00676 Bda-Chr15:10207709 2.80E-105 dispersed
Bda12g00609 Bda-Chr12:24407476 Bda06g00482 Bda-Chr6:6849496 4.30E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00609 - - qsu:112016545 859.366