Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00663 ATGGTAAAAGCAAAGCAGTTCAAAGGTGTAAGACAGCGTCGATGGGGCTCCTGGGTTTCTGAGATTCGTCATCCTTTACTGAAAAGAAGGGTTTGGCTAGGGACGTTTGAATCTGCAGAAGAGGCAGCTAGAGCATATGATGAGGCTGCGATATTGATGAACGGCCGGAATGCCAAAACAAACTTTCCGTCCATCACAAACAAGGCAGCCGGCGATGAGAGTAAGTCTATATCATCTTCTCCGAATTTACTTTCCAACGTCCTCAGCTCTAAGCTTGGACAATGCTGCAAATCTCCATCTCCTTCCCTCACTTGCCTAAGGCTTGACCTCGAGAATTCTCGGATCGGAGTGTGGCAGAAGAGTGCAGGGCCACGTTCTGATTCAAACTGGGTTATGATGGTGGAGTTTGCCGGAAAAAAAGATGAAGGAAACTTTTTACCGGAACTGATCCTCCCAGAGACGTCGCCGGAGAAGGGTTATGGGCGGCTGGATGGTGGAGGTGCATCTGAGGAAGAGAGGATTGCGTTGCAAATGATAGAAGAACTATTGATAGGAATTGAGCCAAATTAA 570 47.54 MVKAKQFKGVRQRRWGSWVSEIRHPLLKRRVWLGTFESAEEAARAYDEAAILMNGRNAKTNFPSITNKAAGDESKSISSSPNLLSNVLSSKLGQCCKSPSPSLTCLRLDLENSRIGVWQKSAGPRSDSNWVMMVEFAGKKDEGNFLPELILPETSPEKGYGRLDGGGASEEERIALQMIEELLIGIEPN 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32052311 32053034 - Bda009087.1 Bda12g00663 17678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00663 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bda12g00663 189 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Bda12g00663 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 183 - -
Bda12g00663 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bda12g00663 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bda12g00663 189 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677
Bda12g00663 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bda12g00663 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bda12g00663 189 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bda12g00663 189 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00143 Bda-Chr11:1883290 Bda12g00663 Bda-Chr12:32052311 7.74E-72 dispersed
Bda12g00663 Bda-Chr12:32052311 Bda13g01247 Bda-Chr13:34905529 9.23E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16791 PF00847 AP2 7.10E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00663 - - qlo:115992483 228.409