Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00685 ATGAATATCCCACCACCCTTTTTTGCCATCAAAACAAGCATTCTACTCTCTTCCAGTTGCGTTTGCTTAGACTTATTTCCTATTATAACGCCTTTCAGTTGCCAATTTCCCGTTCGAATCTTGAATATTTTTGGAATCTGCAGTCCATTTCCACCCTGTATTCTTTTCCTCCTCTTCTATAAAACACACATCAATAAGCTCTCAATTCTCACACCTACAACCAAAACAGCCCTCCTCCATCGGCCAATGGCTTGCAGCGCTGCCGACCTTCACTCCCTCCTCGGCGGCACAGCCAATGCCACCTCTGCTGCCGCCTACATCTGCTCACAATTCGATGCCGTTTCCAGCAAGTTTATCGACACAAACTATGCCATCGATAACACCTATCTTCTCTTCTCTGCCTACTTGGTTTTCGCCATGCAGCTCGGCTTTGCCATGCTCTGTGCCGGCTCGGTTCGAGCGAAGAACACGATGAACATCATGCTGACCAACGTTCTCGACGCTGCAACTGGTGGTCTCTTCTATTATCTCTTTGGATTTGCGTTGGCTTTTGGCACTCCTTCAAATGGGTTCATTGGGCAGCACTTTTTTGGGCTGAGTAAATTTCCTGCTCCATCGTTTGACTATGGCTTCTTTCTGTATCAGTGGGCTTTCGCCATTGCAGCTGCTGGAATAACCAGCGGTTCGATTGCAGAGAGAACCCAGTTTGTTTCTTATTTGATCTATTCTTCTTTCTTGACCGGTTTGGTTTACCCTATTGTTTCCCACTGGTTCTGGTCTGCTGATGGCTGGGGAAGCCCTGCTAGAGCTGATGGTCTCTTGCTTGACTCTGGGGTTATTGACTTTGCTGGCTCCGGTGTCGTTCACTTGGTTGGTGGCATTGCTGGCTTGTGGGGAGCCTTCATTGAGGGGCCGAGAATTGGCCGATTCGACCATGGAGGCAAGGCTGTGGCTCTACGCGGCCACAGCGGCACACTCGTCGTTCTTGGCACTTTCCTTCTCTGGTTCGGTTGGTATGGTTTCAACCCAGGCTCGTTCCTCAACATAGCCAAGGCTTATGGAGAAAGTGGATCGTATTACGGGCAGTGGAGTGCAATCGGAAGAACTGCAGTGACGACAACCCTCGCTGGCTGCTCTGCCGCCCTGACAACCCTCTTCGGAAAACGATTGCTCTCAGGCCATTGGAACGGAACTGACGTGTGCAACGGCTTGCTTGGTGGGTTCGCAGCCATCACCGGTGGGTGCTCCGTGGTTGACCCGTGGGCTGCAGTTCTATGTGGGTTCGTGGCAGCCTGGGTCCTTATAGGCTTCAACAAGCTAGCTGAGAAGCTCAAGTACGACGACCCGCTCGAAGCAGCTCAGCTCCACGGAGGGTGCGGAATGTGGGGAATAATCTTCACCGGATTGTTTGCCAAAAAAGCTTATGTCAACGAGATATATCCTGGGCAGCCAGACAGACCCTATGGGCTGCTTATGGGCGGTGGAGGAAAGCTATTGGCTGCACACATTGTTCAGATACTAGCCATTCTAGGCTGGGTGAGCATAACGATGGGGACTCTCTTCTGGATCCTGCACAAATTGAAGCTTTTGAGAATTACTGCTGAAGAGGAAATGGCAGGAATGGATTTGACCAGCCATGGAGGGTTTGCATATGAGTACAAGGACGAGAACAAATCCGAGCTCATCATAAAGGGGGATCCTTGA 1704 50.53 MNIPPPFFAIKTSILLSSSCVCLDLFPIITPFSCQFPVRILNIFGICSPFPPCILFLLFYKTHINKLSILTPTTKTALLHRPMACSAADLHSLLGGTANATSAAAYICSQFDAVSSKFIDTNYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFALAFGTPSNGFIGQHFFGLSKFPAPSFDYGFFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVSHWFWSADGWGSPARADGLLLDSGVIDFAGSGVVHLVGGIAGLWGAFIEGPRIGRFDHGGKAVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNIAKAYGESGSYYGQWSAIGRTAVTTTLAGCSAALTTLFGKRLLSGHWNGTDVCNGLLGGFAAITGGCSVVDPWAAVLCGFVAAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGMWGIIFTGLFAKKAYVNEIYPGQPDRPYGLLMGGGGKLLAAHIVQILAILGWVSITMGTLFWILHKLKLLRITAEEEMAGMDLTSHGGFAYEYKDENKSELIIKGDP 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33348517 33350220 + Bda009121.1 Bda12g00685 17700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00685 567 TIGRFAM amt: ammonium transporter 126 551 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda12g00685 567 Gene3D Ammonium transporter AmtB like domains 103 565 IPR029020 -
Bda12g00685 567 PANTHER AMMONIUM TRANSPORTER 83 559 - -
Bda12g00685 567 ProSitePatterns Ammonium transporters signature. 281 306 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bda12g00685 567 SUPERFAMILY Ammonium transporter 124 532 - -
Bda12g00685 567 Pfam Ammonium Transporter Family 129 551 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bda12g00685 567 PANTHER AMMONIUM TRANSPORTER 83 559 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01290 Bda-Chr4:63411787 Bda12g00685 Bda-Chr12:33348517 1.36E-67 dispersed
Bda07g01164 Bda-Chr7:13855341 Bda12g00685 Bda-Chr12:33348517 0 dispersed
Bda09g01532 Bda-Chr9:46997618 Bda12g00685 Bda-Chr12:33348517 5.62E-18 dispersed
Bda12g00685 Bda-Chr12:33348517 Bda13g00031 Bda-Chr13:504384 1.55E-63 dispersed
Bda12g00685 Bda-Chr12:33348517 Bda05g00875 Bda-Chr5:57197472 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00685 K03320 - jre:109020544 853.203