Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00688 TCCTGTGGAACCGGAAATCCGATTGATGACTGTTGGCGGTGTGACTCACACTGGCAGATGCGCCGGAAGCACCTGGCCGACTGTGGCATTGGATTCGGACGCAATGCTATTGGTGGTCGAGATGGTCGATTCTATGTAGTCTCCGATTCTGGAGATGACGACCCTGTGAATCCGAGGCCTGGCACTCTGCGCCACGCTGTTATTCAAGATCAGCCTCTGTGGATAGTGTTCAAGCGTGATATGGTGATCAATTTGAAGCAAGAGCTCATTATGAACAGCTTTAAGACGATTGATGGTCGTGGTGTAAACGTTCGTATTGCTTATGGGGCTTGCATTACGATTCAGTTTGTTACGAACGTCATTATCCACGGCCTCCACATTCACGATTGCAAGCCGACTGGCAATGCGATGGTGAGAAGCTCGCCTAGCCATTACGGGTGGAGGACGATGGCCGATGGAGATGCGATTTCCATCTTTGGGTCGAGCCACATTTGGATCGACCACAACTCTCTCTACAATTGTGCCGATGGCCTGGTCGACGCTGTCATGGGTTCTACTGCCATTACCATTTCAAACAACTACTTTACTCACCACAACGAGGTAATATTACTGGGTCATAGTGACTCCTACACAAGGGACAAGCAAATGCAAGTGACAATTGCCTACAATCATTTTGGAGAGGGTCTCATCCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTTGTAAACAACGACTACACACACTGGGAAATGTATGCCATTGGTGGAAGTGCTGATCCCACAATTAACAGCCAGGGGAATAGATACCTTGCCCCTACAAACCCTTTTGCAAAAGAGGTTACAAAGAGGGTCGATCCGAACACATATCAATGGAGACACTGGAATTGGAGATCAGAAGGAGACCTGTTGCTAAATGGAGCCTTCTTCATTCCATCAGGAACTGGGGTCGGAGCAAGTTATGCAAGAGCATCCAGTTTGGGAGCCAAGTCGTCCTCCTTGGTCGCCTCCATCACCTCCGGTGCAGGTGCTCTTTCTTGTCGCCGAGGCTACCAGTGCTAA 1065 49.2 SCGTGNPIDDCWRCDSHWQMRRKHLADCGIGFGRNAIGGRDGRFYVVSDSGDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVINLKQELIMNSFKTIDGRGVNVRIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLYNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPTNPFAKEVTKRVDPNTYQWRHWNWRSEGDLLLNGAFFIPSGTGVGASYARASSLGAKSSSLVASITSGAGALSCRRGYQC 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33372667 33373981 + Bda009124.1 Bda12g00688 17703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00688 354 Pfam Pectate lyase 89 269 IPR002022 -
Bda12g00688 354 PANTHER PECTATE LYASE 1 351 - -
Bda12g00688 354 PANTHER PECTATE LYASE 18-RELATED 1 351 IPR045032 GO:0030570
Bda12g00688 354 SUPERFAMILY Pectin lyase-like 2 349 IPR011050 -
Bda12g00688 354 SMART amb_all 80 277 IPR002022 -
Bda12g00688 354 Gene3D - 5 347 IPR012334 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 52 77 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 152 173 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 232 251 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 325 348 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 28 45 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 88 104 IPR018082 -
Bda12g00688 354 PRINTS Pollen allergen Amb family signature 296 320 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00883 Bda-Chr5:57295485 Bda12g00688 Bda-Chr12:33372667 0 dispersed
Bda12g00688 Bda-Chr12:33372667 Bda13g00026 Bda-Chr13:467230 0 dispersed
Bda15g00151 Bda-Chr15:4087033 Bda12g00688 Bda-Chr12:33372667 3.82E-175 dispersed
Bda12g00688 Bda-Chr12:33372667 Bda05g00882 Bda-Chr5:57283467 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00688 K01728 - mnt:21398282 689.108