Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00689 ATGGGGATTGAAGATGGAAGAAACATGTGGCTTGAGAAGGAGCAGGAGGATCTGCTAAATGACACTTCCATTTTCTACGCTGACTTTCCTCCTCTCCCAGATTTTCCATGCATGTCGTCATCTTCTTCTTCGTCCTCGGCAACTTCTGCACAGGTTAAGGCTATGGCCGGCTCGTCTTCTTCTTCTTCGTCTTCTTCGTCTGCGGCTTCTTGGGCAGTTCTGAAATCAGATGCCGATGGAGACGGGGGGAAGCAAAACCATCACTACGGCCTCCACGATCAGTCGCCTACGACTCTTGCGTCTACTGCTTCCATGGAGATCCCTCGAGGTCCCGATCGTGGGGTCGATTGCATGGATATGATGGAGACTTTTGGGTACATGGACATGCTAGAAAGCAATGATTTTTTCGATCCTTCATGTATATTCCAAGGTGATATCCCATTAGACACTTTATCGGAACTCCCTCAACAAGAAAACGGAGTCCATGAAAATCCAGAGAGTCAAGTTCTTCAAATCGATAGTAATATGAGCAACGAGGGGATGATCGAGGAAGAAGAAGATGATAGAGATAAAGAAGATATGGGTAAAGTGTTCTTGGAGTGGCTCAGAACAAACAGAGAGACTGTTTCTGCCGACGATTTAAGAAGTGTGAGGATCAAGAAATCAACGATCGAATGTGCGGCGCGGCGGCTAGGCGGAGGAAAAGAAGCGATGAAGCAATTGCTGAAGCTAGTTCTTGAATGGGTTCAGACGAATCATCTTCAAAAACGAAGATTGAAAGAGACATCACAATCACAGTCGGCGGCTAATATTCAATTCCAGGATCCATTTCAAAGCCCTAACCCTAACACAAACTGTGATCTCAACACGAATTCAATCACACAAGGATTATCTAATCCTTCTTGTTTCGCTCCAAATCCATGGCCGATTCAGGCTCCACCCTTCGTTACCCATCCGACTGCCACCATTGTTGCCACAGCTCCACCTTCGTATCCCCCTTCAATGGTGGGATACATGGTTGACCATATTTCAAATGGATCATCACATACGAACCATAATCCTTACCCTCCTCCAAACGATCAGTTCCAAATGCTTGATTCTCCTCAAGCATGGCCGCCATCACAGTTCGCTTTAGCATCAGCCCATTTCGGTTCTTTTACAGAAAACAATCTGCTGCCTCATCAGCAAGGATTCAGCTCTGGATATGGAAGCCAATACCCCTATCAGTATTTTCATGGGCAGGGAGAAAGATTGTTGAGATTGGGATCTTCAGCTACAAAGGAAGCGAGGAAGAAAAGAATGGCGAGGCAACGACGGCTTTCGTCCCACCAAAGGAATCATTCGGTTCATCAAAATCACAATCAACAGAATCATATTTCGAGTCAAGGATCTGATCATCAGCAGATTAAAACAGATGAGAATTGTACTGCCGAATTAGCTCCCCTCGCACAAGCTAATCCAGGCAACTGGGTGTACTGGCCTTCTTCCTCAGATTCTCAGCCCATGAATCCGTCAGACCGGGCGCCCATTCCGGGCCAAAGTTTTGGCGGAAAAATAGCATCTGATAGGCGACAGGGATGGAAGCCTGCGAAGAATTTGAAGTTTCTTCTGCAGAAAGTTTTGAAGCTAAGTGATGTGGGTAATCTCGGAAGAATTGTGTTGCCCAAGAAAGAAGCAGAAACCCATCTACCAGAGCTTGAAGCAAGAGACGGCATCTCCATCGCCATGGAAGACATTGGTACTTCTCGAGTTTGGAACATGCGTTACAGGTACTGGCCAAACAACAAAAGTAGGATGTATCTCCTTGAAAACACAGGGGATTTTGTGAGAGCAAATGGACTCCAAGAGGGAGACTTCATAGTCATCTACTCGGACGTCAAATGTGGCAAATATATGATTCGAGGGGTTAAGGTCAGGCAACCAGGGCCAAAATTAGAGAGCAAAAGGCAAGGCAAACCACAAAGGAATCTGCAACAAAACGCCTCGTCGAATCCTGCTTCTTCTCTTCCTAGTGTTTGTCACGACGCTTCCTCACTCTCACCCACTAACTCATGCCATAGTTGA 2064 46.27 MGIEDGRNMWLEKEQEDLLNDTSIFYADFPPLPDFPCMSSSSSSSSATSAQVKAMAGSSSSSSSSSSAASWAVLKSDADGDGGKQNHHYGLHDQSPTTLASTASMEIPRGPDRGVDCMDMMETFGYMDMLESNDFFDPSCIFQGDIPLDTLSELPQQENGVHENPESQVLQIDSNMSNEGMIEEEEDDRDKEDMGKVFLEWLRTNRETVSADDLRSVRIKKSTIECAARRLGGGKEAMKQLLKLVLEWVQTNHLQKRRLKETSQSQSAANIQFQDPFQSPNPNTNCDLNTNSITQGLSNPSCFAPNPWPIQAPPFVTHPTATIVATAPPSYPPSMVGYMVDHISNGSSHTNHNPYPPPNDQFQMLDSPQAWPPSQFALASAHFGSFTENNLLPHQQGFSSGYGSQYPYQYFHGQGERLLRLGSSATKEARKKRMARQRRLSSHQRNHSVHQNHNQQNHISSQGSDHQQIKTDENCTAELAPLAQANPGNWVYWPSSSDSQPMNPSDRAPIPGQSFGGKIASDRRQGWKPAKNLKFLLQKVLKLSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGPKLESKRQGKPQRNLQQNASSNPASSLPSVCHDASSLSPTNSCHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33397373 33399994 - Bda009125.1 Bda12g00689 17704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00689 687 CDD BfiI_C_EcoRII_N_B3 535 636 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 262 291 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 496 523 - -
Bda12g00689 687 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 647 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 641 687 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 431 446 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 425 468 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 652 687 - -
Bda12g00689 687 Pfam B3 DNA binding domain 538 634 IPR003340 GO:0003677
Bda12g00689 687 ProSiteProfiles B3 DNA-binding domain profile. 537 639 IPR003340 GO:0003677
Bda12g00689 687 MobiDBLite consensus disorder prediction 37 72 - -
Bda12g00689 687 SMART B3_2 537 639 IPR003340 GO:0003677
Bda12g00689 687 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 647 IPR044800 GO:0003700
Bda12g00689 687 SUPERFAMILY DNA-binding pseudobarrel domain 536 632 IPR015300 -
Bda12g00689 687 MobiDBLite consensus disorder prediction 447 468 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 90 104 - -
Bda12g00689 687 MobiDBLite consensus disorder prediction 37 112 - -
Bda12g00689 687 Gene3D - 528 641 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01056 Bda-Chr1:44728740 Bda12g00689 Bda-Chr12:33397373 3.51E-34 dispersed
Bda09g00108 Bda-Chr9:1959470 Bda12g00689 Bda-Chr12:33397373 1.32E-15 dispersed
Bda12g00689 Bda-Chr12:33397373 Bda05g01144 Bda-Chr5:59629321 5.86E-11 dispersed
Bda12g00689 Bda-Chr12:33397373 Bda07g01526 Bda-Chr7:28386869 2.13E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16793 PF02362 B3 1.50E-16 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00689 - - jre:109006057 744.962