Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00756 ATGGGGACGGCAGTGCTCGCCGCAGAAGAACAAGCGGAACAACTGAAAAGGGAAGGCAACATTTGCTTCAAGAAAGGTCGCGTTGGAGCTGCCATAGATGCCTATACGGAGGCAATTACGTTATGCCCAAATGTTCCTGTGTATTGGACAAACAGAGCAGTATGCCATCGCAAGCGGAATGACTGGAAGAAGGTGGAGGAGGACAGTAGGAAAGCTATTGAGGTCGACAAAAGTTATGCCAAGGCCCATTATATGCTGGGATTAGCATTATCAAAGAAAGAAGAATATCCTGAAGGAATCAAGCATTTAGGGAAGGCGTTGGAACTCTTTAAAGGTGAGAACCAGAAGAATCTCATTGTAGAAGACATTTGGAAAGAACTTGCAAGGGCAAAGTACTTGGAGTGGGAGCTTGCGTCCACCGCCAGATCGTGGGAATTACAAAGCTTGAAGGAGGCTTGTGAGACAGCTCTTAAGCAAATGCATTTTCTTGAAAATTCTGAGGCTGAAGAAGTCTTTGATGAAGCTTATTTTTCCCGTATCAGACAAATGGAGGCTTTAGATGCTGTATTTAGGAAAGTTTCGGAGGCGGATGTGCCGACTGAGGTTCCGGATTATTTATGCTGTAAAATATCGCTCGATATTCTTTGGGATCCTGTCATTACTCCTTGCGGTATTACATACGAGAGAGCAGTGATTCTCGACCATATTCAAAAGGTGGGAAAGTTCGATCCGGTCACGAGGGAAGAGCTTGACGAATCGCAGCTTGTGCCAAACTTAGCGATCAAAGAAGCAGTGGAAGCCTTCCAAGACAAACACAGATGGGCATATCAGACAGATTGA 840 45.24 MGTAVLAAEEQAEQLKREGNICFKKGRVGAAIDAYTEAITLCPNVPVYWTNRAVCHRKRNDWKKVEEDSRKAIEVDKSYAKAHYMLGLALSKKEEYPEGIKHLGKALELFKGENQKNLIVEDIWKELARAKYLEWELASTARSWELQSLKEACETALKQMHFLENSEAEEVFDEAYFSRIRQMEALDAVFRKVSEADVPTEVPDYLCCKISLDILWDPVITPCGITYERAVILDHIQKVGKFDPVTREELDESQLVPNLAIKEAVEAFQDKHRWAYQTD 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35686484 35696884 + Bda009241.1 Bda12g00756 17771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00756 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Bda12g00756 279 CDD RING-Ubox_CHIP 202 268 IPR045202 -
Bda12g00756 279 Coils Coil 146 166 - -
Bda12g00756 279 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Bda12g00756 279 SUPERFAMILY RING/U-box 195 276 - -
Bda12g00756 279 SUPERFAMILY TPR-like 10 131 IPR011990 GO:0005515
Bda12g00756 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
Bda12g00756 279 Gene3D Tetratricopeptide repeat domain 4 175 IPR011990 GO:0005515
Bda12g00756 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 278 IPR045200 GO:0000209|GO:0061630
Bda12g00756 279 PANTHER OS08G0113300 PROTEIN 7 278 - -
Bda12g00756 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Bda12g00756 279 Pfam Tetratricopeptide repeat 80 109 IPR019734 GO:0005515
Bda12g00756 279 Pfam Tetratricopeptide repeat 19 44 IPR019734 GO:0005515
Bda12g00756 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Bda12g00756 279 SMART tpr_5 12 45 IPR019734 GO:0005515
Bda12g00756 279 SMART tpr_5 46 79 IPR019734 GO:0005515
Bda12g00756 279 SMART tpr_5 80 113 IPR019734 GO:0005515
Bda12g00756 279 ProSiteProfiles TPR repeat profile. 12 45 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00836 Bda-Chr5:56921583 Bda12g00756 Bda-Chr12:35686484 5.98E-164 dispersed
Bda12g00756 Bda-Chr12:35686484 Bda12g00767 Bda-Chr12:36283255 1.64E-81 dispersed
Bda12g00756 Bda-Chr12:35686484 Bda06g00045 Bda-Chr6:464308 7.77E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00756 K09561 - csv:101215457 396.356