Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00757 ATGGCGAAGACTGGTGTGTTCGATTCTGATCCGGCGGTGTTGGCGAAGACAGCGGAGTTGAAGTGGAAATTGCAGAGACTCGCTAGGGTTATCGTAGACGATGATGATTACAGCGCAGAAATAATCGATCAGGCTAAAGATACGCTCTTAGCGCTGAAAGAATTGAGGCTGAGTAATCGATCTTTGTCTTTGAAGCATCTCGATTCTCCGAGTTTCCCTGAAGAGTATCGTTGCCCTCTTTCCAAAGAAATGATGAGAGATCCTGTGATCGTGTCAACCGGTCAGACCTATGACAGACCCTTCATCCAAAAATGGCTGAAAGCAGGAAATAGAACATGCCCCAGGACTCAACAAGCGCTTTCACACACAATGCTTACTCCTAATCACGTAATTAGGGAGATGATATATCAATGGTGTAAAAGCAGAGGAATCGAAGTATCAGATTCTGTTCACTATCCCAATGACGAAGGTGTAACAGAAGCAGATCGAGGTCATTTTCTTGATTTGCTCAAGAAGACGTCATCCTCCCCAATTTCTGAGCAGAAGGAAGCAGCAAAAGAGCTACGATTGTTGACAAAGCGGATTCCTTCATTCCGGGGTCTTTTCAGCGAAACTCCAAACTCTATCCAGTCTTTACTCCTACCAATCTCTCATACGGAGATGCAAAGTTGTATTGATTCTGATCTTCAGGAAGATGTAATCACAACCCTTTTGAATTTGTCAATCCATGACAACAACAAGAAGCTGGTTGCTGAAACTCCTACTGTAATTCCTCTTCTCATGGAAGCACTAAGATCAGGAACGATAGAAACGAGAACCAATTCGGCTGCAACCCTTTTCACTTTATCAGCGCTCGATTCAAACAAGGCCCTGATAGGGAAAGCAGGAGCATTAAAACCTCTCATAGATCTCTTGGAAGAGGGGCATCCTTTAGCCATGAAAGATGTAGCTTCTGCAATCTTTAATCTCTGTATAATCCACGAGAACAAGGAAAGAGCAGTCCGAGACGGGGCTGTCAGAGTGATTTTGAGGAAGCTGATGAAAAATGTCCATGTCGATGAGTTGTTAGCCATTCTTGCAATGCTTTCGAGCAATCAGAAGGCCGTTGAGGAAATGGGGGAGGTCGAAGCCGTTCTTTGCTTGCTCGGCATGATCCGGGACAATCCTTGTGCAAGAAACAAGGAGAACAGCATCGCAATTCTTCACACAATCTGTTTAAATGATCGATCGAGGTGGAAGGAAATGAGGGAAGCCGAGAAAACTTACGGTTTGATCTCTGATCTTGCTCAAAATGGAACGTCAAGAGCGAAAAGGAAGGCAAACGGCATAATTGAGAGACTGAACCGGGCCATTAACATCACTCACACTGCCTAA 1374 44.61 MAKTGVFDSDPAVLAKTAELKWKLQRLARVIVDDDDYSAEIIDQAKDTLLALKELRLSNRSLSLKHLDSPSFPEEYRCPLSKEMMRDPVIVSTGQTYDRPFIQKWLKAGNRTCPRTQQALSHTMLTPNHVIREMIYQWCKSRGIEVSDSVHYPNDEGVTEADRGHFLDLLKKTSSSPISEQKEAAKELRLLTKRIPSFRGLFSETPNSIQSLLLPISHTEMQSCIDSDLQEDVITTLLNLSIHDNNKKLVAETPTVIPLLMEALRSGTIETRTNSAATLFTLSALDSNKALIGKAGALKPLIDLLEEGHPLAMKDVASAIFNLCIIHENKERAVRDGAVRVILRKLMKNVHVDELLAILAMLSSNQKAVEEMGEVEAVLCLLGMIRDNPCARNKENSIAILHTICLNDRSRWKEMREAEKTYGLISDLAQNGTSRAKRKANGIIERLNRAINITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35699324 35701191 - Bda009242.1 Bda12g00757 17772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00757 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 455 - -
Bda12g00757 457 SUPERFAMILY RING/U-box 68 147 - -
Bda12g00757 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Bda12g00757 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Bda12g00757 457 PANTHER U BOX DOMAIN-CONTAINING 6 455 - -
Bda12g00757 457 Gene3D - 146 453 IPR011989 -
Bda12g00757 457 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Bda12g00757 457 SUPERFAMILY ARM repeat 168 447 IPR016024 -
Bda12g00757 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 145 IPR013083 -
Bda12g00757 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Bda12g00757 457 CDD RING-Ubox_PUB 76 118 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01159 Bda-Chr7:13705313 Bda12g00757 Bda-Chr12:35699324 2.61E-110 dispersed
Bda10g00536 Bda-Chr10:39177759 Bda12g00757 Bda-Chr12:35699324 0 dispersed
Bda12g00757 Bda-Chr12:35699324 Bda14g00363 Bda-Chr14:2631344 5.26E-96 dispersed
Bda12g00757 Bda-Chr12:35699324 Bda07g00590 Bda-Chr7:7230889 5.20E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00757 - - mnt:21398908 683.33