Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00767 ATGCATTTTCTTGAAAATTCTGATCCTGAAGAAGCCTTTGATGAAGCTTATTTTTCCCATATCAAACAAATAGAGGCTTTAGATGCTGTATTTAGGAAAGTTTCGGAGGCGGACATGCCAACTGAGGTTCCGGATTATTTATGCTGTAAAATATCGCTCGATATTCTCTGGGATCCTGTCATTACTCCTTGCGGTATTACATATGAGAGAGCAGTGATTCTCGACCATATTCAAAAGGTGGGAAAGTTCGATCCGGTCACCCGGGAAGAGCTTGACGAATCGCAGCTTGTGCCAAACTTAGCGATTAAAGAAGCAGTGGAAGCCTTCCAAGACAAACACAGATGGGCATATCAGACAGATTGA 363 42.42 MHFLENSDPEEAFDEAYFSHIKQIEALDAVFRKVSEADMPTEVPDYLCCKISLDILWDPVITPCGITYERAVILDHIQKVGKFDPVTREELDESQLVPNLAIKEAVEAFQDKHRWAYQTD 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36283255 36284201 + Bda009256.1 Bda12g00767 17782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00767 120 CDD RING-Ubox_CHIP 43 109 IPR045202 -
Bda12g00767 120 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 14 118 IPR045200 GO:0000209|GO:0061630
Bda12g00767 120 ProSiteProfiles U-box domain profile. 42 116 IPR003613 GO:0004842|GO:0016567
Bda12g00767 120 SUPERFAMILY RING/U-box 36 117 - -
Bda12g00767 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Bda12g00767 120 Pfam U-box domain 43 115 IPR003613 GO:0004842|GO:0016567
Bda12g00767 120 SMART Ubox_2 46 109 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00756 Bda-Chr12:35686484 Bda12g00767 Bda-Chr12:36283255 1.64E-81 dispersed
Bda12g00767 Bda-Chr12:36283255 Bda14g01265 Bda-Chr14:13332278 1.10E-11 dispersed
Bda12g00767 Bda-Chr12:36283255 Bda13g01812 Bda-Chr13:41997811 1.19E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00767 K09561 - ghi:107910966 176.407