Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00786 ATGGGTAATAAACTTGGAAGGAAGAGACAAGTGGTTGATGAAAAGTACACAAGGCCTCAGGGGCTTTACACCCATAAAGATGTGGATCATAAAAAGCTTAGAAAACTCATACTTGAGTCAAAGCTGGCTCCATGCTATCCTGGAGATGATGAATTAATAAGTGATCTTGAGGAATGTCCAATTTGTTTTATGTATTATCCAAGTCTCAATCGATCAAGATGCTGCATGAAAAGCATATGTACAGAGTGTTTTCTACAGATGAAGGTTCCCAATTCAACTCGTCCTACACAGTGTCCTTTTTGCAAAACCTCAAATTATGCGGTGGAGTATCGAGGGGTAAAAACAAAGGAAGAGAAGGGTTTGGAGCAAATTGAAGAACAGCGTGTTATAGAAGCAAAAATCAGGATACGACAGAAAGAACTTCAAGATGAAGAGGAGAGAGATCAAAAAAAACTAGAACATAGCTCCTCTAGCAGAAATATGGGGCCAGTGGACATTGAATACAGCTCAGTGCCCGCTCCTTTGGAAGACGATGAAATTCATTGTTTCCAAGACTCATGTGCTACTCCATTAAGACAGTCGCTTCTACCTCTACCTCAAAGGGCCAACAGGGATGATGAATTTGATCTGGATCTTGAGGACATCATGATCATGGAAGCAATTTGGCTGTCTATTCAGGAGAAAGGGAGGCATAAAGATCCTACATACAATGATGCCGCTCCTGCTGATAGATATGTCACTGAAAGTCGGTATATCTGTCCGTCCACTGTTAAACTAGCTGGATCATCGTCATCCCCATCGGGAGGGCTAGCTTGTGCTATAGCCGCCCTTGCAGAGCATCAGCAGACAGGTGGAGAATCATTAACCAACACTTCCGTTGGAGACTCCTCATCCTTCAACATGCTTCGAACGGGAAGCAGTAGATTTTTCGGCAGAATGAACTCTGCTACCGAGAATTATCAACTGGCACAAAGCTCAATTGACACTTTACCTGGTAGTTCGATAACGAGGAATGATGGTGAGTGGAATGTGGATCGTGGGTCTGAAGTGGCTGAAGCTGGAACTAGCTATGCAGGCTCTGATGGGACAGCTGATGGGACGGTGGAAGATTCTGGTGCTATGACGGTGTGTTTGTCTGGGACTGATGAAATAGAGGGGAGTATGCGAACTAATGATGAAGCCATCTTACCTGAGAGCTTCGAAGAACAGATGATGTTAGCCATGGCCGTGTCGCTGGCTGAGGCGAGAGCAACAACTGGTGCTGTGCCTGGGATTTCATGGCAATGA 1287 44.68 MGNKLGRKRQVVDEKYTRPQGLYTHKDVDHKKLRKLILESKLAPCYPGDDELISDLEECPICFMYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKTKEEKGLEQIEEQRVIEAKIRIRQKELQDEEERDQKKLEHSSSSRNMGPVDIEYSSVPAPLEDDEIHCFQDSCATPLRQSLLPLPQRANRDDEFDLDLEDIMIMEAIWLSIQEKGRHKDPTYNDAAPADRYVTESRYICPSTVKLAGSSSSPSGGLACAIAALAEHQQTGGESLTNTSVGDSSSFNMLRTGSSRFFGRMNSATENYQLAQSSIDTLPGSSITRNDGEWNVDRGSEVAEAGTSYAGSDGTADGTVEDSGAMTVCLSGTDEIEGSMRTNDEAILPESFEEQMMLAMAVSLAEARATTGAVPGISWQ 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36784256 36788889 - Bda009286.1 Bda12g00786 17801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00786 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DA2 1 428 - -
Bda12g00786 428 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Bda12g00786 428 SUPERFAMILY RING/U-box 57 108 - -
Bda12g00786 428 MobiDBLite consensus disorder prediction 141 155 - -
Bda12g00786 428 PANTHER PROTEIN SIP5 1 428 IPR039301 -
Bda12g00786 428 MobiDBLite consensus disorder prediction 141 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00786 - - - zju:107423739 557.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00786 Bda-Chr12:36784256 Bda05g00816 Bda-Chr5:56662042 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g948 . . . . Bpe09g00284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00997 Blo10g00691 . Bda12g00786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003428 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 5 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00786 Bda_Chr12 FPKM 11.201243 12.541217 11.100039 10.756649 16.573875 13.964802 15.673484 11.20201 9.455117