Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00789 ATGGAGATGGGCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCGTCGTCGTCTTCTTCTTACCGGTTGATTTCCTTCAATCGACACAGTTCGAAGAAGAGTATAAAGGGTTCTCTGCAGTCTCCTCCTCTTCTCCATGTTCCTCAAAGTCCTCCCTCCATTTTCGCCCCCAAGGAAAGGTCTCCTTCTTTCACTTCTTCTGCTTCGTCCTCTGCGAATTCGAAGCCTCGGGAATGGAATCTCCTGCAAAAAGCTGCATCAATGGCGCTAGACGCATTGGAAACCACCTTAGTTTCGCATGAAAAGAAGCAGTCGCTTCCGAAAACGGCGGACCCGAGAGTCCAAATCGCCGGAAACTTTGCTCCGGTTCCGGAGCAACAACCGCGACATTTCTTACCTGTTAATGGCAAAATCCCCGATTGCATTCAGGGCGTCTACGCTCGAAACGGAGCCAACCCCCTTTATGAGCCGGTCGCCGGCCACCACTTATTCGACGGCGACGGTATGATCCACGCCGTTCAATTCAAAAACGGCGCCGCTTCCTACGCCTGCCGGTTTACTCAGACTGAAAGACTGGTTCAAGAAAAAGCCCTTGGCCGATCCATCTTCCCCAAAGCAATCGGAGAACTGCACGGCCATTCCGGCATAGCTCGCTTGCTTTTGTTCTCTGCTCGCTCATTATTCGGTCTCCTCGATCAGAGCCGCGGAATCGGGGTCGCAAACGCCGGCGTCGTTTACTTCAACGGCCACCTTCTCGCTATGTCAGAGGACGATTTACCGTACCACGTTCAAATCACCCCCTCTGGCGACCTGAAAACCGTCGGGAGATACAATTTCGACGGCCAACTTAAATCAACTATGATCGCCCACCCCAAAATCGACCCAGTTTCTGGCGAACTATTCGCTCTAAGCTACGACGTGGTTCAGAAGCCCTACCTGAAATACTTCCGCTTCTCGCCGGACGGGCAAAAATCACCAGACGTAGAAATTCCTCTGGAGCAACCAACCATGATGCATGATTTCGCAATCACGGAGAAATTCGTAGTGATTCCAGATCAACAAGTTGTTTTCAATCTCGCCGAGATGATCTCCGGGGGCTCGCCGGTCATCTATGACAAGAATAAGATTTCCAGGTTTGGAATTTTGGATAAAAATGCAGAGGATTGCTCTGGAATCAAGTGGATTGAAGCGCCGGATTGCTTCTGCTTCCACCTCTGGAACGCATGGGAGGAGCCAGAAACCGACGAGGTAGTTGTGATCGGATCCTGCATGACTCCGGCGGACTCCATTTTCAATGAATGCGACGAGAACTTAAAATCCGTCCTATCCGAAATCCGGCTAAATCTCAAGACCGGAAAATCCACCCGTCGCCCGATCATTTCCGATTCCGAGCAAATGAACCTAGAAGCAGGAATGGTAAACCGAACCCGTCTCGGCCGCAAAACCCGATTTGCATATCTAGCTCTCGCGGAGCCATGGCCGAAAGTTTCAGGCTTCGCGAAAGTAGACCTCTCCACCGGCGAAGTCAGAAAATACATTTACGGCGATCAGAGATTCGGGGGCGAGCCTCTGTTCTTACCCACTTCAGAAAACGAAGAAGAAGGCTACATTCTGGCCTTCGTCCACGACGAAAAGGAGTGCAAATCAGAACTGCAAATCATAAACGCCATGACCATGGAGCTCGAAGCTTCGATCCAACTTCCATCAAGAGTTCCATACGGATTCCACGGTACTTTCATAAACGAAAAAGATTTAGCCAAACAAGCCTGA 1773 50.48 MEMGSASSSSSSSSSSSSSSSYRLISFNRHSSKKSIKGSLQSPPLLHVPQSPPSIFAPKERSPSFTSSASSSANSKPREWNLLQKAASMALDALETTLVSHEKKQSLPKTADPRVQIAGNFAPVPEQQPRHFLPVNGKIPDCIQGVYARNGANPLYEPVAGHHLFDGDGMIHAVQFKNGAASYACRFTQTERLVQEKALGRSIFPKAIGELHGHSGIARLLLFSARSLFGLLDQSRGIGVANAGVVYFNGHLLAMSEDDLPYHVQITPSGDLKTVGRYNFDGQLKSTMIAHPKIDPVSGELFALSYDVVQKPYLKYFRFSPDGQKSPDVEIPLEQPTMMHDFAITEKFVVIPDQQVVFNLAEMISGGSPVIYDKNKISRFGILDKNAEDCSGIKWIEAPDCFCFHLWNAWEEPETDEVVVIGSCMTPADSIFNECDENLKSVLSEIRLNLKTGKSTRRPIISDSEQMNLEAGMVNRTRLGRKTRFAYLALAEPWPKVSGFAKVDLSTGEVRKYIYGDQRFGGEPLFLPTSENEEEGYILAFVHDEKECKSELQIINAMTMELEASIQLPSRVPYGFHGTFINEKDLAKQA 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36862993 36864765 - Bda009290.1 Bda12g00789 17804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00789 590 Pfam Retinal pigment epithelial membrane protein 121 581 IPR004294 GO:0016702
Bda12g00789 590 PANTHER BETA-CAROTENE DIOXYGENASE 48 590 IPR004294 GO:0016702
Bda12g00789 590 MobiDBLite consensus disorder prediction 1 20 - -
Bda12g00789 590 MobiDBLite consensus disorder prediction 60 77 - -
Bda12g00789 590 MobiDBLite consensus disorder prediction 33 77 - -
Bda12g00789 590 PANTHER 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED5, CHLOROPLASTIC-RELATED 48 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00789 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - tcc:18594534 908.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00797 Bda12g00789 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00157 Bda-Chr2:27183449 Bda12g00789 Bda-Chr12:36862993 0 dispersed
Bda08g00064 Bda-Chr8:522215 Bda12g00789 Bda-Chr12:36862993 8.91E-10 dispersed
Bda10g00717 Bda-Chr10:41591364 Bda12g00789 Bda-Chr12:36862993 9.21E-101 dispersed
Bda10g00718 Bda-Chr10:41609935 Bda12g00789 Bda-Chr12:36862993 8.90E-100 dispersed
Bda04g00732 Bda-Chr4:56533028 Bda12g00789 Bda-Chr12:36862993 9.29E-101 transposed
Bda12g00789 Bda-Chr12:36862993 Bda05g00797 Bda-Chr5:56431360 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g944 . . . . Bpe09g00281 . . . . Cmo04g00691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00797 Bda12g00789 . Bpe03g00857 . . . . . . Cma16g00460 Car04g00599 Car16g00417 Cpe14g00387 Cpe01g00581 . . . . . . . Cla07g01003 Cam07g1078 Cec07g1150 Cco07g1128 Clacu07g1053 Cmu07g1043 Cre07g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000637 4 3 3 4 4 3 5 3 3 2 3 3 5 3 3 5 3 5 6 3 3 3 3 3 3 3 3 3 3 1 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00789 Bda_Chr12 FPKM 20.516096 22.340942 2.272145 3.518346 0.646432 0.587367 1.087325 0.5182 0.502733