Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00790 ATGGCTGCGGTTGCTGATGTGCGGGGCGAGGAAGTGGGTTCGAAAAATTTCGACTCGAAATCGAAACCTGTATCGGAGTTCGATATGGAAAAGCTCGTTGATTTGTTTAGCAAATTGAATCCTTCGGCTAAAGAATTTTTCCCGGCTTACGCTCATCTTGATCAACATCATCCTGGCTATTTTTATCATGATCATCAATTTTTTGATAACTATTTCGCATTCGCTGATAACAACTGGGTCGACGACAATCCCAACAATCGAAGGAGAAGAAATGCATCTAACCAAGGGAGGAGAAGAATGAATGGGCGAAGTTTTAGAGCCCAACGTGAAGATAGTGTCAGACGAACTGTTTATGTGTCCGACATTGACCAACAAATTTTTAAATTTGATTTCTTAAACATTTTCTTGAAGGTAATTGACTGCCGGATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCCTTTGTGGAGTTTTCTGATGAGTATGGTGCTAGAGCAGCTTTAAATCTTGGTGGGACAATGCTAGGCTACTATCCAGTTCGAGTTTTGCCTTCAAAAACTGCCATCCTTCCTGTTAATCCTTCATTTCTCCCCAGGTCAGATGATGAACGGGAAATGTGTACCAGAACCATCTATTGTACAAATATTGATAAGAAGGTATCTCAGACTGAAGTCAAAAACTTTTTTGAAGCAGCTTGTGGTGAGGTCACTCGCTTGAGGCTGTTGGGAGATCAGGTGCATTCTACTCGTATAGCTTTTGTGGAATTTACAATGGCTGAAAGCGCTATTCTTGCACTCAACTGCAGCGGGTTGGTATTGGGATCCCAACCAATTCGGGTAAGTCCGTCAAAGACTCCTGTGAGGCCACGCATTGCTCGTCCGGCATTAACTGTTATATCATAG 903 42.52 MAAVADVRGEEVGSKNFDSKSKPVSEFDMEKLVDLFSKLNPSAKEFFPAYAHLDQHHPGYFYHDHQFFDNYFAFADNNWVDDNPNNRRRRNASNQGRRRMNGRSFRAQREDSVRRTVYVSDIDQQIFKFDFLNIFLKVIDCRICGDPHSVLRFAFVEFSDEYGARAALNLGGTMLGYYPVRVLPSKTAILPVNPSFLPRSDDEREMCTRTIYCTNIDKKVSQTEVKNFFEAACGEVTRLRLLGDQVHSTRIAFVEFTMAESAILALNCSGLVLGSQPIRVSPSKTPVRPRIARPALTVIS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36876520 36880960 + Bda009291.1 Bda12g00790 17805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00790 300 MobiDBLite consensus disorder prediction 1 20 - -
Bda12g00790 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Bda12g00790 300 CDD RRM2_CID8_like 205 286 IPR034825 -
Bda12g00790 300 Gene3D - 196 290 IPR012677 -
Bda12g00790 300 Gene3D - 75 188 IPR012677 -
Bda12g00790 300 SUPERFAMILY RNA-binding domain, RBD 68 185 IPR035979 GO:0003676
Bda12g00790 300 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 295 - -
Bda12g00790 300 SMART rrm1_1 116 183 IPR000504 GO:0003723
Bda12g00790 300 SMART rrm1_1 210 281 IPR000504 GO:0003723
Bda12g00790 300 MobiDBLite consensus disorder prediction 83 107 - -
Bda12g00790 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 295 - -
Bda12g00790 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723
Bda12g00790 300 SUPERFAMILY RNA-binding domain, RBD 198 291 IPR035979 GO:0003676
Bda12g00790 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Bda12g00790 300 Pfam Ataxin-2 C-terminal region 35 48 IPR009818 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00790 - - - jre:108994422 401.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00815 Bda12g00790 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00141 Bda-Chr5:6216503 Bda12g00790 Bda-Chr12:36876520 3.69E-107 dispersed
Bda07g01957 Bda-Chr7:36952438 Bda12g00790 Bda-Chr12:36876520 1.33E-117 dispersed
Bda12g00790 Bda-Chr12:36876520 Bda01g00111 Bda-Chr1:17078961 2.52E-07 dispersed
Bda12g00790 Bda-Chr12:36876520 Bda05g00815 Bda-Chr5:56631553 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00790 Bda_Chr12 FPKM 11.987081 12.030253 16.806704 17.043327 19.77713 21.060453 24.264496 23.193403 23.005058