Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00798 GCAGTTCCTTTTATCATTTTAAATGAAAAGCAGCAATTAGTTGTTCTGCTATTGCATAACTTAACCAATAAAGCTCCTGATCTTGGCACTCCCTCTTCCTTGACTGAAGTTCCACATGTAGTGATGGAGAGTGAGTTTCCTCAAGAAGAATGGGTTCATTTCGGGTTACAGATATCTACCACGTTCACGAGGCTGTTCATTAACGGGAACTCTGTGGGGGAGAAGTTTTCGTCAGTCAAAGAAGAACACAAATCAACTTTCGTGGGGAAGATTTTTCTGGTTGGCAGAAAAAATGGGAAGAGTGTGGAAGGGTATGTTCACAATGCAGAAGTCTTGCCCACCAAAATGAGATCAATCAACAGACATTATCATAAGGATCCACCTATTCGATTATCTATTGACAACTCATCTACCTCCGAGATTGAAGTAGGCGATGATGGTGTGTGGAGTATTGTTGGCGGCAAGGCATCCTGTCCTGTATTAAAGGAAATGGAGGTTGTTGCTTCCCTTATCTTTGCGCACAATGGAAAACTTGTGGAGAAGACAAGTGATAAAGAGCCTCCCCTTTTTGCAACCTACGATGGAATCGAATTTCCTTCTCGTGATCGACCGAGTAAACTTTTGCATGGGAGAGCGTCCTTTAAACTAAAGATATCCCAGCTTTCTTCCAAGTGTGATAATCGGTTATTTTGTATTAGATTTCACGCACCTGAAGATGGAAGTTATTCCTTCCATGAAGTAGTATCCCCTCCAATTCGTTGTATTTCCCGGAGTAGGAATACACGAGTGACGCCGTTATGGAAAAATTTAGCAACTCCCATCAACCCCGTTGATAAATTGGCCACTGCTTCCGATTCTGTTGATATATCTCCATTGCAGAAGAAATTAAGAACTTCTTCAGAACTTGTTAAATCTCCTCCTCCATCTATGATGCCTGATAGATTAGAACAAGTTAGAATTTCTGCAACCTCAAGCGACTTGCCGAGCGTAGAGCGACCTGATGAAGAATGCAGCTCCCATATCATCAATTGCAATCAGGTGGAAAATGTATCTGACCCAAGTTTGGAAGGGGGAACAGAGGACAGTGAAGAAGCAGAAGACTCACCGTCTGTTTCGGGAAGCAATGAGCGTAGAACTTTGATTTCAAATCAATCGTCAGACAGACTAAATCTAATCTCAGATGCTAGCGTTTTCAAATACTGCCTAGCGGACGTAGCTGAGAGGTCACTCATGCTCAGGGAGATAGCAACCACTGTTTCAGATGAAGTTGTTTTTGAATTTGCAGCTCAGATTTCCCTCTATTCAGGTTGCTTACACCACAGGATTGCCCACCCTGATGCCGGTAATTTGGTTGTCACTTATGTCGGCACTGACTACTCCCTTCATCATCGTCTTCTTTCCTTCGATTCTATGTACAGGTGCTAA 1425 42.81 AVPFIILNEKQQLVVLLLHNLTNKAPDLGTPSSLTEVPHVVMESEFPQEEWVHFGLQISTTFTRLFINGNSVGEKFSSVKEEHKSTFVGKIFLVGRKNGKSVEGYVHNAEVLPTKMRSINRHYHKDPPIRLSIDNSSTSEIEVGDDGVWSIVGGKASCPVLKEMEVVASLIFAHNGKLVEKTSDKEPPLFATYDGIEFPSRDRPSKLLHGRASFKLKISQLSSKCDNRLFCIRFHAPEDGSYSFHEVVSPPIRCISRSRNTRVTPLWKNLATPINPVDKLATASDSVDISPLQKKLRTSSELVKSPPPSMMPDRLEQVRISATSSDLPSVERPDEECSSHIINCNQVENVSDPSLEGGTEDSEEAEDSPSVSGSNERRTLISNQSSDRLNLISDASVFKYCLADVAERSLMLREIATTVSDEVVFEFAAQISLYSGCLHHRIAHPDAGNLVVTYVGTDYSLHHRLLSFDSMYRC 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36977730 36983997 + Bda009301.1 Bda12g00798 17813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00798 474 MobiDBLite consensus disorder prediction 286 305 - -
Bda12g00798 474 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 442 - -
Bda12g00798 474 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 445 473 - -
Bda12g00798 474 MobiDBLite consensus disorder prediction 284 314 - -
Bda12g00798 474 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 442 IPR001217 GO:0003700|GO:0006355|GO:0007165
Bda12g00798 474 MobiDBLite consensus disorder prediction 348 380 - -
Bda12g00798 474 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 445 473 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00798 - - - qsu:111989336 401.364
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16801 None None None None Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00798 Bda_Chr12 FPKM 6.982845 8.996151 9.616781 8.958929 7.823789 7.71368 8.963582 12.641914 11.033134