Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00807 ATGGCCTTGCAATTGCAAATGAGTTGGCAGCCGAGTTTACTGAGTCAGAAGAGGAAGAACAGCGCCCCACTCGGTTTGAGAAACCTCGGGAACACCTGCTATCTCAACAGCGTTCTTCAGTGCCTTACTTACACCCCTCCCCTAGCCGATTTCTGCCTCCGGAATCAGCACTCGTCGCTGTGTAATTTTTCTCGACGATTCCTCTTCTTTCATTTTTTTTTCTCGATTTCGGTTTTCGTGAACCTAGGTGTTCATGTTTTTGCAGGCGATTTTGCTTCTTCTGATTCGGAGCGAAAGCGCGACTGTCCTTTTTGCATACTGGAGAGGCGGATAGTTCGGTCTTTGAGCGCGGATCTCACTTTGGATGCTCCTCTTAAGATCCAGAACTGTCTGAAGATCTTTGCTGAGCATTTTCGATTGGGACGTCAGGAGGACGCTCATGAGTTTCTTCGCTATGTCATAGATGCTTGCCATAACACTTGTCTTCGCTTGAAGAAGCTTAGACGGAATGACAGCGCTTGTGGAATTGGCGGTGCCTCTGTTGTGAAGGATATATTTGGAGGTTCCTTGCAGAGCCAGGTGAAGTGTTCATCATGTGGCAACGATTCCAATAAGATTGACGAGATGATGGATATAAGTCTTGATATTTTGCATAGTAATTCACTTAAGGAGTCCTTGCATAAGTTCTTTCTGCCTGAGGTTTTGGATGGCACCAACAAGTATAAGTGTGACAATTGCGATAAGTTGGTGGCAGCGAGAAAGCAAATGTCAATATTTCAAGCTCCCAATGTACTTGTAATTCAATTAAAGAGATTTGAGGGCATATTTGGCGGGAAGATTGATAAAGCCATCGCCTTTGAAGAAGCTTTGCTGCTTTCTTGTTTCATGTGCAAAACAAGTCAGGATCCACAACCAGAATACAAGCTCTTCGGTACCATTGTGCATTCAGGATTCTCACCAGAGTCTGGACATTACTACGCATATATCAAGGATGCCATGGATAGATGGTTTTGCTGCAATGACTCGTATGTTTCCGTTTCAAGCCTGCAGGAGGTCTTGTCCGAAAAGGCTTATATTCTTTTCTTTTCTAGAACTAACCAAAGACCACTATCTGCTAGTACTTTCCTTGCTTCCAATGGTGTAAAGTCTCATGCTGGTAATGGATGTGAAGCTGTGAAAAACCCAAAGACTGCACCTCTGGTAAATGGAAAATCCAATGGTGTACAACAATCGCTGAAGGACCTTGATATTTCTTCCAAGGTTGACAGACTGCCTTCTTGCCCTCAGATGAAATTTAATATAGTTGGAAAGTCTAGTCCCAGAATATCTGCAGCCACTGTTAATGGAAAGGTTGCCGTTTCTACAAATCATGGCACCACTGTGAATGTGAATGAGAAGCACAGGTTTCATGTAGTGCCAAATTCGAACGATAAGCTGTTCCTAACAAATGGACATGGTGTTATTAACGAAAAAAAGGTTGATGGAGTTCACAGAGAGGGTGGTAAAACATCTGTCTTAATGAATGGAAATGGTAAGGCTTCAATGAAGTCAGAATATGATGCCAGTAATGATATGAGTAACGAGTTGACTGCAAAAAAGCTTAACCATGAACTGCATACTGGGGGAGGTAACTGCCATTTGGAAGGCAAGGGATCCAAAAGAAAATTGTCGGAGAGCTCTTGTATTTTGCTTCGACAAGACGCCCAATCGCTGGCAAAGGTTGAAGAATTGAAGGAAGTTCTCAAGAACGAAGCCTTTTCAACCCTACGATCAAATGGATGGTTAGAGGAAGTCTACAATTTGTTCCATTCAAGGAAGAAATTATGTGCACAACAAGAGGAAATCACTTCAAAGAGTACTTTTGAGAAATTTCTGATTGCAGAGGTCAAACCAAATCTTATTTCACGGGTGCCTGAGTCATTGAAGGAGAACCTTATTCAACGCCTTCGGTTATTTAGTCAGGAAAAGTGA 1971 42.77 MALQLQMSWQPSLLSQKRKNSAPLGLRNLGNTCYLNSVLQCLTYTPPLADFCLRNQHSSLCNFSRRFLFFHFFFSISVFVNLGVHVFAGDFASSDSERKRDCPFCILERRIVRSLSADLTLDAPLKIQNCLKIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNDSACGIGGASVVKDIFGGSLQSQVKCSSCGNDSNKIDEMMDISLDILHSNSLKESLHKFFLPEVLDGTNKYKCDNCDKLVAARKQMSIFQAPNVLVIQLKRFEGIFGGKIDKAIAFEEALLLSCFMCKTSQDPQPEYKLFGTIVHSGFSPESGHYYAYIKDAMDRWFCCNDSYVSVSSLQEVLSEKAYILFFSRTNQRPLSASTFLASNGVKSHAGNGCEAVKNPKTAPLVNGKSNGVQQSLKDLDISSKVDRLPSCPQMKFNIVGKSSPRISAATVNGKVAVSTNHGTTVNVNEKHRFHVVPNSNDKLFLTNGHGVINEKKVDGVHREGGKTSVLMNGNGKASMKSEYDASNDMSNELTAKKLNHELHTGGGNCHLEGKGSKRKLSESSCILLRQDAQSLAKVEELKEVLKNEAFSTLRSNGWLEEVYNLFHSRKKLCAQQEEITSKSTFEKFLIAEVKPNLISRVPESLKENLIQRLRLFSQEK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37186722 37191730 - Bda009313.1 Bda12g00807 17822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00807 656 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 307 325 IPR018200 GO:0004843|GO:0006511
Bda12g00807 656 Coils Coil 564 584 - -
Bda12g00807 656 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 102 405 - -
Bda12g00807 656 Gene3D Cysteine proteinases 17 367 - -
Bda12g00807 656 CDD Peptidase_C19E 23 363 - -
Bda12g00807 656 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 15 62 - -
Bda12g00807 656 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 102 405 - -
Bda12g00807 656 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 365 IPR028889 -
Bda12g00807 656 Pfam Ubiquitin carboxyl-terminal hydrolase 25 362 IPR001394 GO:0004843|GO:0016579
Bda12g00807 656 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 62 - -
Bda12g00807 656 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Bda12g00807 656 SUPERFAMILY Cysteine proteinases 20 366 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00807 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101218797 732.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00895 Bda-Chr9:24988485 Bda12g00807 Bda-Chr12:37186722 1.94E-61 dispersed
Bda10g00084 Bda-Chr10:1821439 Bda12g00807 Bda-Chr12:37186722 1.09E-28 dispersed
Bda12g00807 Bda-Chr12:37186722 Bda13g01355 Bda-Chr13:35919912 1.09E-51 dispersed
Bda12g00807 Bda-Chr12:37186722 Bda05g00800 Bda-Chr5:56450859 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00807 . . . . . . . Cma04g00641 . Car04g00597 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00807 Bda_Chr12 FPKM 3.941176 3.845884 7.271396 5.792715 10.942969 11.59272 11.846963 3.878586 4.203354