Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00810 ATGGCTGAATATACTCCAAAGAACATCCTCATAACTGGGGCTGCTGGTTTTATTGCATCTCATGTTGCCAATCGGCTTGTCAAACTCTACCCAGACTACAAGATTGTTGTGCTTGACAAGCTTGATTACTGTTCTAATCTGAAGAATCTTCTCCCTTCGAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGCAGCGCCGACCTGGTCAATTATCTCCTCATCACCGAGTCGATCGACACGATTATGCATTTTGCTGCACAAACTCACGTCGATAACTCTTTCGGTAATAGTTTCGAGTTCACGAAGAACAACATTTATGGAACTCACGTGCTTCTTGAAGCTTGCAAAGTGACTGGCCAAATCCGAAGGTTCATCCATGTCAGCACCGATGAGGTCTACGGGGAGACAGATGAGGATGCAGTCGTGGGAAATCACGAGGCCTCTCAACTCCTTCCAACAAATCCTTACTCGGCAACAAAAGCCGGAGCCGAAATGCTTGTGATGGCATATGGCAGGTCGTATGGATTGCCAGTGATCACGACGAGAGGCAATAATGTTTACGGGCCGAATCAATTTCCGGAGAAATTGATTCCGAAATTCATCCTCTTGGCCATGGAAGGAAAGCCTCTTCCGATTCATGGAGATGGATCAAACGTCAGGAGTTATCTGTATTGCGAGGACGTTGCAGAGGCTTTTGAAGTCGTTCTTCACAAAGGCGAAGTCGGTCATGTTTACAATATCGGAACGAAGAAAGAACGGAGAGTTATAGATGTTGCTGAAGATGTCTGCAGACTTTTCTCGATGGATCCAGCCGAGAGTATCAAATTTGTCGAAAACAGGCCTTTTAACGACCAGCGATACTTTCTGGATGATCAAAAACTCAAAAACATCGGATGGTCCGAGCGGACTACTTGGGCGGAAGGACTAAAGAAGACTATGGATTGGTATATTAAGAATCCTGATTGGTGGGGTGATGTGTCCGGGGCTTTGCTTCCACACCCGAGAATGCTTATGATGCCAGGTGGATTCGAAAGGCATCAGGACGGATCAGAAGAGAAAAAACCAGCTTCTTCAGCCTCGAGCAATCCTCCTCTGGTGATTCCATCCCCCTTGAAAAAGTCTCCTCCTCGAGAGACAGCTCTCAAGTTCTTGATCTATGGCAGAACTGGGTGGATTGGCGGTCTTCTTGGAAAAATATGCCAAAAGCAAGGAATTTCATATGAATACGGAAAAGGGCGTCTGGAGGATCGATTGTCACTCGTATCTGATATCCGGAATGTTAAACCGACTCATGTTTTCAATGCTGCTGGTGTGACTGGAAGACCGAATGTCGATTGGTGTGAAAGTCATAAAACGGAAACGATTCGAACGAATGTTGTCGGAACTCTCAACTTAGCTGATGTTTGCAGGGAAAATGGACTGCTTATGATGAACTTTGCTACTGGCTGCATATTTGAATATAATCATGCTCATCCACAAGGATCTGGAATCGGATTTACCGAGGAAGACATGCCCAATTTTACGGGTTCTTTTTACTCGAAAACAAAGGCAATGGTGGAGGAGCTCTTGAAAGAATACGAGAATGTCTGCACTCTAAGAGTCCGTATGCCGATATCATCCGATCTAAACAACCCGAGAAACTTTATCACTAAAATCTCTCGATACAACAAAGTCGTGAACATCCCAAACAGCATGACCGTCTTGGACGAGCTCCTCCCGATTTCAATCGAGATGGCAAAACGAAACTTGAAAGGTATTTGGAACTTCACTAATCCCGGCGTCGTGAGCCATAACGAGATTCTCGAAATGTACAAGAATTACATCGACTCCAAATTCAAGTGGGAGAACTTCACGCTCGACGAGCAAGCAAAAGTGATCGTCGCTCCGAGAAGCAACAACGAAATGGATGCATCGAAGTTGAAGGAGGAGTTCCCCGAATTATTATCGATAAAAGAGTCGTTGATCAAGTACGTCTTCGAATCGAACAAGAAAACTACTTCTGCATGA 2016 44.99 MAEYTPKNILITGAAGFIASHVANRLVKLYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMEGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAEDVCRLFSMDPAESIKFVENRPFNDQRYFLDDQKLKNIGWSERTTWAEGLKKTMDWYIKNPDWWGDVSGALLPHPRMLMMPGGFERHQDGSEEKKPASSASSNPPLVIPSPLKKSPPRETALKFLIYGRTGWIGGLLGKICQKQGISYEYGKGRLEDRLSLVSDIRNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVVGTLNLADVCRENGLLMMNFATGCIFEYNHAHPQGSGIGFTEEDMPNFTGSFYSKTKAMVEELLKEYENVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKNYIDSKFKWENFTLDEQAKVIVAPRSNNEMDASKLKEEFPELLSIKESLIKYVFESNKKTTSA 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37323613 37325718 + Bda009319.1 Bda12g00810 17825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00810 671 Pfam RmlD substrate binding domain 385 556 IPR029903 -
Bda12g00810 671 Gene3D - 378 671 - -
Bda12g00810 671 Gene3D - 200 322 - -
Bda12g00810 671 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Bda12g00810 671 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Bda12g00810 671 Gene3D - 9 313 - -
Bda12g00810 671 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 1 666 - -
Bda12g00810 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 660 IPR036291 -
Bda12g00810 671 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 666 - -
Bda12g00810 671 CDD dTDP_HR_like_SDR_e 385 657 - -
Bda12g00810 671 MobiDBLite consensus disorder prediction 344 376 - -
Bda12g00810 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00810 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - qsu:111999181 1218.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00244 Bda-Chr7:3133136 Bda12g00810 Bda-Chr12:37323613 0 dispersed
Bda09g00541 Bda-Chr9:7103342 Bda12g00810 Bda-Chr12:37323613 0 dispersed
Bda12g00810 Bda-Chr12:37323613 Bda04g00616 Bda-Chr4:54785616 3.63E-24 dispersed
Bda13g01581 Bda-Chr13:39320002 Bda12g00810 Bda-Chr12:37323613 3.62E-12 dispersed
Bda13g01303 Bda-Chr13:35254595 Bda12g00810 Bda-Chr12:37323613 0 transposed
Bda12g00810 Bda-Chr12:37323613 Bda05g00806 Bda-Chr5:56525400 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
Vvi19g798 . . . . . . . . Cmo16g01053 . . . . . . . . . . . . . . . Cla10g00340 Cam10g0353 Cec10g0367 Cco10g0361 Clacu10g0354 Cmu10g1190 Cre10g0602 . . . . . Csa03g00360 . Cme06g02677 . . . Bda12g00810 . . . . Sed08g2852 . . . . . . Cpe14g00830 . Bhi11g00377 Tan01g1928 Cmetu06g1879 . . Mch10g1456 . . . . . . . . . . Chy06g01963 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00810 Bda_Chr12 FPKM 16.65766 18.246704 92.451576 89.948402 11.495284 7.896521 9.143819 2.428648 4.126987