Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00814 ATGACTTCAGGAACGAGGCTACCAACATGGAGGGAAAGGGAAAACAATATGAGAAGGGAGAGGAGGAGGAGAGCGATTGCTGCTAAGATCTTCTCTGGCCTAAGAATGTACGGGAACTATAGGCTCCCCAAGCACTGCGATAACAATGAGGTCCTGAAAGCTCTCTGCGACGAGGCCGGTTGGACAGTTGAATCAGACGGCACCACCTACCGTAAGGGATATAAGCATGTTGAACGATTAGATCTTGTTGGTGAACTGGCAGCCAATGCGTGCTCGTCTCAGCAACACAGTCCTTGTGCTTCCTACAATCCAAGCCCCGGTTCTTCTGCTTTTCCGAGTCCAACCTCATCTTCTTATGCTGCTGCCAATCCAACGACGGATGGAAATTCCCTCATCCCATGGCTTAAAAATCTTTCAGCTGCCTCATCGTATGCCTCCTCTTCTAAGCTCCCTCACCACTACATCCAAGGAGGCTCTATCAGTGCTCCAGTTACCCCACCGTTGAGCTCCCCGACTGCCATAACACCCCGAATTAATGCCAATTGGGAAGAACAGGCCACCCAACCTGGTCGGAGTGCTCAACATTACCCGATCCTGCCATCCTCTACTCCACCGAGCCCCGGTCGACAAATATTTCTGGATCCAGAATGGTTTTCCCGGCTTAGAATTCCTCACGGTGGAACTAATTCTCCAACATTCAGCCTTGTCTCTACTAACCCTTGTGACTTTAAGGAAGAGGCTTTGGCTTGTGGTGGATCGCGTACGTGGACTCCCGGGCAAATCCAAACATGCTCTCCTGCCCTTGCAGCAGGCTCTGATCACACTGCAGACATTCCAATGGCTGAAGTTGTTTTAGATGAGTTTGCATTTGGAAACAGTGCAGCTCGGATAGTAGTCAAGGCTTGGGAAGGAGAGAGGATCCATGAAGATAGTGGATCAGATGACCTCGAGCTGACTCTTGGAAGTTCAAGGACAAGGTACGTTTGA 987 50.25 MTSGTRLPTWRERENNMRRERRRRAIAAKIFSGLRMYGNYRLPKHCDNNEVLKALCDEAGWTVESDGTTYRKGYKHVERLDLVGELAANACSSQQHSPCASYNPSPGSSAFPSPTSSSYAAANPTTDGNSLIPWLKNLSAASSYASSSKLPHHYIQGGSISAPVTPPLSSPTAITPRINANWEEQATQPGRSAQHYPILPSSTPPSPGRQIFLDPEWFSRLRIPHGGTNSPTFSLVSTNPCDFKEEALACGGSRTWTPGQIQTCSPALAAGSDHTADIPMAEVVLDEFAFGNSAARIVVKAWEGERIHEDSGSDDLELTLGSSRTRYV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37547736 37550395 - Bda009325.1 Bda12g00814 17829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00814 328 MobiDBLite consensus disorder prediction 95 122 - -
Bda12g00814 328 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Bda12g00814 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 327 - -
Bda12g00814 328 MobiDBLite consensus disorder prediction 186 206 - -
Bda12g00814 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 327 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00814 - - - tcc:18594295 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00543 Bda-Chr1:32367504 Bda12g00814 Bda-Chr12:37547736 8.80E-48 dispersed
Bda03g00253 Bda-Chr3:2274748 Bda12g00814 Bda-Chr12:37547736 4.06E-44 dispersed
Bda07g00961 Bda-Chr7:11496069 Bda12g00814 Bda-Chr12:37547736 1.82E-133 transposed
Bda12g00814 Bda-Chr12:37547736 Bda05g00812 Bda-Chr5:56614124 2.35E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g82 . . . . . . Bma10g00457 . Cmo16g00463 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0204 . . . . . . . . . . Bda12g00814 . . . . . . . . Cma16g00431 . . Cpe14g00363 . . . . . . . . . . . . . . . . Csa04g00815 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g00543 BCT 33 318 BZR Transcription Factor Family AT1G75080 64.6 1.5e-88 323.2
Bda03g00253 BCT 33 316 BZR Transcription Factor Family AT1G75080 65.3 1.4e-86 316.6
Bda01g00543 BCT 33 316 BZR Transcription Factor Family AT1G19350 63.7 5.3e-89 324.7
Bda03g00253 BCT 33 317 BZR Transcription Factor Family AT1G19350 61.9 2.8e-82 302.4
Bda01g00543 BCT 1 313 BZR Transcription Factor Family AT3G50750 50.8 4.2e-60 228.4
Bda07g00961 . 77 328 BZR Transcription Factor Family AT4G18890 55.1 2.6e-54 208.8
Bda07g00961 . 1 328 BZR Transcription Factor Family AT1G78700 70.0 5.6e-112 401.0
Bda05g00812 . 1 333 BZR Transcription Factor Family AT1G78700 66.8 2.2e-108 389.0
Bda12g00814 . 1 326 BZR Transcription Factor Family AT1G78700 65.9 5.6e-96 347.8
Bda03g00253 BCT 33 212 BZR Transcription Factor Family AT4G36780 56.2 2.6e-38 156.0
Bda01g00543 BCT 33 212 BZR Transcription Factor Family AT4G36780 56.8 3.4e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16802 PF05687 BES1_N 8.90E-59 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00814 Bda_Chr12 FPKM 102.090324 105.053848 43.798882 42.962379 246.393677 202.421829 258.649872 29.418613 29.030956