Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00817 ATGTCTCTTCGCAAAGCTTTGTTGTCTCGGATTTCGTCTTCCAAGTCTTTTAAGGAATCCAAAGGTGTGGAAGAGGTTGCGCGAGTCGATCCGGAGATCGGGAAAGATTTGTCAGCCGAGTCTTCTGGCGAAGTTTGTAACTCTGCCTGGTCTTCGATGCTTCCGGAGATTCTCAGCGAGATTATAAAGCGCGTTGAGGTTAGCGACGAACTGTGGCCTCACAGACAGAACGTTGTTGCTTGTGCTTGTGTGTGCAAGCGCTGGAGGGATCTTGCGAAGGAAATCGTCGCGGCTCCTTCGCTTAGTGGAAAAATCACTTTCCCTTCTTGTCTTAAGCAGCCTGGGCCACGCGACCTTCCACATCAATGTATTATAAAACGAAGCAAGAAAACCTCAACCTTTTATCTCCATCTCGCCCTTAGTCAATGTAAGCAAATTCATTCTTTTAATCCTTTCTCAGCATTCACGGATAAGGGAAAGTTTCTCTTAGCTGCACGGAGAAATAGGCATGGAGCTCACACAGAGTATATTATTTCTCTTGATGCTGAAGATATATCTCAAGGAAGCAATGCTTATGTAGGAAAATTAAGTTATGAGAGTATTAGACATGCTAATTTACTTTTATGCCAAGTTCTTTTTGTTCTTTGCCCTTGCAAATCATTTTTTTTAAGCGTTCATTGCTCAGTTGCCTTTTTCCATAGTATTTTTTTGGTTGTTTTCTATTGTCATTTTCCGGATATGTTGTTGGCTGAGCATACGACAATGCTGAGGAGAATATATAGAAAACCTATAGATCTGTTAGAAGAACTAACAACGGGAATGGCAGATTTGATACTTGTTAATAGCAAATTTACTGCATCTACATTTGCTAATACATTCAAGTATCTTGATGCTCGAGGAATTCGACCAGCTGTTCTTTACCCATCAGTCAATGTGGATCACTTTGATGAGCCTCTCTTTTTTTTTTATGTATCCAGTAGGTTAAATTTTCTCTCAATCAACCGCTTTGAAAGGAAAAAGAACATAGAATTGGCAATTTCTGCCTTTTCCATGCTACGAAGCCACAAAGAAGGTGTTCTTCATGGGCATAATTTAGCGGAAGTTTCCTTGATAATCGCGGGTAAGTCACTGCCTCATGACAAAATCTTTTTTCTACTCTCCATTTTCATTTGTCAATTAGCAGGTTTCTTAACATCTCCTTGTGCAGGTGGCTTTGATAATCGACTGAAAGAGAATGTTGAATATCTGAACGAGCTCAAGAGTTTAGCCGAAAGGGAAGGTGTGTCTGACCGAGTGACCTTCATCACCTCTTGCTCTACGGCCGAGAGAAACTCCCTTCTGTCACAATGTCTATGTGTCATTTACACGCCAAAGGATGAACACTTTGGCATTGTTCCGTTGGAAGCAATGGCAGCTCATAAACCTGTTATTGCTTGCAATAGCGGGGGGCCTGTTGAGACAGTTAAAAATGGGGAGACAGGATTTTTATGCGATCCTAATCCACTTGATTTCTCAGTGGCTATGGCTAAACTTGTTCAAAACCATGACATGACAGAAAAAATGGGGAGAGAATCAAGGAAACACGTAAACGAGTCATTTTCGACGAGGATTTTCGGGCAGCAGTTGAATCGGTATCTTGTCGATGTTGTACGAGGTAAGAGAGACTAA 1668 41.55 MSLRKALLSRISSSKSFKESKGVEEVARVDPEIGKDLSAESSGEVCNSAWSSMLPEILSEIIKRVEVSDELWPHRQNVVACACVCKRWRDLAKEIVAAPSLSGKITFPSCLKQPGPRDLPHQCIIKRSKKTSTFYLHLALSQCKQIHSFNPFSAFTDKGKFLLAARRNRHGAHTEYIISLDAEDISQGSNAYVGKLSYESIRHANLLLCQVLFVLCPCKSFFLSVHCSVAFFHSIFLVVFYCHFPDMLLAEHTTMLRRIYRKPIDLLEELTTGMADLILVNSKFTASTFANTFKYLDARGIRPAVLYPSVNVDHFDEPLFFFYVSSRLNFLSINRFERKKNIELAISAFSMLRSHKEGVLHGHNLAEVSLIIAGKSLPHDKIFFLLSIFICQLAGFLTSPCAGGFDNRLKENVEYLNELKSLAEREGVSDRVTFITSCSTAERNSLLSQCLCVIYTPKDEHFGIVPLEAMAAHKPVIACNSGGPVETVKNGETGFLCDPNPLDFSVAMAKLVQNHDMTEKMGRESRKHVNESFSTRIFGQQLNRYLVDVVRGKRD 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37582162 37592752 - Bda009328.2 Bda12g00817 17832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00817 555 Gene3D - 44 101 - -
Bda12g00817 555 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 231 553 IPR027054 GO:0004378|GO:0006486
Bda12g00817 555 Pfam Tub family 111 200 IPR000007 -
Bda12g00817 555 Pfam Glycosyl transferases group 1 330 527 IPR001296 GO:0016757
Bda12g00817 555 Pfam F-box domain 50 96 IPR001810 GO:0005515
Bda12g00817 555 SUPERFAMILY Tubby C-terminal domain-like 99 198 IPR025659 -
Bda12g00817 555 Gene3D Tubby Protein; Chain A 109 210 IPR025659 -
Bda12g00817 555 Gene3D Glycogen Phosphorylase B; 323 534 - -
Bda12g00817 555 SUPERFAMILY F-box domain 38 93 IPR036047 GO:0005515
Bda12g00817 555 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 237 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00817 Bda-Chr12:37582162 Bda08g00735 Bda-Chr8:8827647 2.18E-42 dispersed
Bda13g01817 Bda-Chr13:42098715 Bda12g00817 Bda-Chr12:37582162 1.37E-06 dispersed
Bda12g00817 Bda-Chr12:37582162 Bda08g00279 Bda-Chr8:2908572 4.39E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16803 PF00534 Glycos_transf_1 7.80E-36 CL0113 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00817 K03843 - csin:114289706 439.113