Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00818 ATGTTGAATCTTCTTCCAAACAAGAAAAAAATGGCGGACGCAAAGGCAATTTTATCTCTTGCTGTTTCCGTTGCTGCTTCTGCGGTGCTTGTTCGAAGCATCATCAATGATATAGTACCAGGAGAAACCAAAACGTTTTTGTTTTCTGGCCTCAATTACGTCTATCGCCAATTCTCATCCCAGCTGACCCTTGTCATTGACGAATTTCAAGGCCTCTCCATTAACCAGGTCTTCGAAGCTGCAAATGACTACTTAGGCAGGATTGCTTCTCCGTCTGCTGAAAGACTGAAAGTGAGCAAAGGTGAGAATGACAAGAGCTTGATAATCAACATTGATCGGGATGAAGAAGTGGTCGACATCTATGACAACATCAAGATTACATGGACATTGATTTCCACGAAGACGGAAAAATCTGGCGAAAGCCATCCAGGTGACCTAAATGCTTCGTTGAAATCTGAGGTTAGAGCGTACGAGTTGACATTTAACAAGAAACATAGAGAGAAAGTTTTGAATTCTTACATTCCGTTTATTATGGAGAGAGCTAAGGCCATTAAGGAAGAGCAGAAGATGATTCAGCTCCATACTGTTAATTATAATTCTTGGGATGGGAATACTGTAACTCTCAATCATCCCATGACCTTCGAAACGCTAGCAATCGATAACGAGCTTAAGAAATCGATAATGGACGATTTGGACAGCTTTGTTAAGGGAAAAGATTTCTACAGAAAAATCGGAAGGGCTTGGAAACGAGGATACCTGTTGTACGGACCTCCCGGAACGGGAAAGTCGAGCTTGATTGCAGCGATGGCTAATCACCTGAACTACGACGTCTACGATTTGGATTTAACAGACATTTTTAGAAACTCTGATTTGAGAGGGCTGTTGCTTGGTATGTCTAATCGTTCGATCCTCGTCATTGAAGACATCGATTGCTCTATCAAACTGAAGAATCGAGAATCGGAAGAGAAAGAAGACGATGACGACTCCTCTCAAAATAAGGTCACACTCTCCGGTCTTCTCAACTTCATCGACGGTCTCTGGTCGTGCTGCGGAGAAGAACGAGTGATCATCTTCACGACAAATCACAAGGAGAAGCTCGATCCAGCATTATTACGGCCGGGACGAATGGATATGCATATCAATCTGTCATACTGCACCATTTCTGCGTTCAAGCAATTAGTCATGAATTACGTCCGATTTCTCACCAAGATATATCATCCTAACATTGATAAGCTTGGGAGGATATGCCTTGATATTCTGAAAGACAAATGGAGTCCCGCTCTCCAAATAAGAACTGTGCTTTTAAGTATTCAAGCTCTGCTGAGTGCGCCAAACCCTGACGATCCACTTTCCGAGAACATTGCGAAACATTGGAAAACAAATGAAGCTGAAGCCGTTGAAACAGCCAAGGAATGGACCCGTTTGTATGCAAGTGGAGCTTGA 1443 42.83 MLNLLPNKKKMADAKAILSLAVSVAASAVLVRSIINDIVPGETKTFLFSGLNYVYRQFSSQLTLVIDEFQGLSINQVFEAANDYLGRIASPSAERLKVSKGENDKSLIINIDRDEEVVDIYDNIKITWTLISTKTEKSGESHPGDLNASLKSEVRAYELTFNKKHREKVLNSYIPFIMERAKAIKEEQKMIQLHTVNYNSWDGNTVTLNHPMTFETLAIDNELKKSIMDDLDSFVKGKDFYRKIGRAWKRGYLLYGPPGTGKSSLIAAMANHLNYDVYDLDLTDIFRNSDLRGLLLGMSNRSILVIEDIDCSIKLKNRESEEKEDDDDSSQNKVTLSGLLNFIDGLWSCCGEERVIIFTTNHKEKLDPALLRPGRMDMHINLSYCTISAFKQLVMNYVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37604835 37610919 - Bda009329.1 Bda12g00818 17833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00818 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 402 IPR027417 -
Bda12g00818 480 CDD AAA 249 384 - -
Bda12g00818 480 CDD UBCc 398 473 IPR000608 -
Bda12g00818 480 Pfam ATPase family associated with various cellular activities (AAA) 253 383 IPR003959 GO:0005524|GO:0016887
Bda12g00818 480 Pfam Domain associated at C-terminal with AAA 40 131 IPR025753 -
Bda12g00818 480 Gene3D - 202 379 IPR027417 -
Bda12g00818 480 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 405 420 IPR023313 -
Bda12g00818 480 Gene3D Ubiquitin Conjugating Enzyme 380 479 IPR016135 -
Bda12g00818 480 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 404 - -
Bda12g00818 480 SMART ubc_7 317 478 - -
Bda12g00818 480 SMART AAA_5 248 386 IPR003593 -
Bda12g00818 480 PANTHER BCS1 AAA-TYPE ATPASE 12 404 - -
Bda12g00818 480 SUPERFAMILY UBC-like 398 478 IPR016135 -
Bda12g00818 480 Pfam Ubiquitin-conjugating enzyme 398 472 IPR000608 -
Bda12g00818 480 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 317 478 IPR000608 -
Bda12g00818 480 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00818 K08900 BCS1; mitochondrial chaperone BCS1 - gmx:100778503 506.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00154 Bda-Chr10:4501678 Bda12g00818 Bda-Chr12:37604835 3.17E-150 dispersed
Bda10g00155 Bda-Chr10:4520465 Bda12g00818 Bda-Chr12:37604835 1.32E-95 dispersed
Bda12g00818 Bda-Chr12:37604835 Bda09g00963 Bda-Chr9:38719720 9.25E-107 dispersed
Bda12g00818 Bda-Chr12:37604835 Bda11g00990 Bda-Chr11:9680146 3.62E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000988 5 1 1 3 2 3 2 3 3 3 2 3 4 2 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00818 Bda_Chr12 FPKM 6.683911 6.824192 11.461579 12.349361 4.736474 5.031806 4.979783 1.861947 1.809481