Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00820 ATGGCTCGATTCTGCTTTTGTATTCCAAAAAGTGGAGCTTCCTCCACGAAACAAACAGTTGGAGTTGACAACATTGATGAAGAGGTTTCTAACATTGAAAATGTGCACTTATACTCTTACAAAGAACTAATGACGGCCACTGGAAATTTTAGTCCTGCAAATAAGATTGGACAGGGAGGTTTTGGCCCTGTTTACAAGGGAAGGCTCAAAAATGGATCCATGGCTGCTATAAAGGTACTATCTGCGGAGTCAATCCAAGGCGTAAGAGAATTTTTGACAGAAATTAATGTAATTACAGATATTGAGCACGAAAACCTCGTTAAATTGTACGGCTGCTGCATTGAAGGGAACAACAGGATCTTGGTTTATGGTTATCTAGAAAATAATAGCCTTGCACAAACACTTCTTGGTGAAGGCCACAGTAGTATCCAATTCAATTGGCAAACGAGGCATAAAATCTGTGTTGGTATTGCTCGTGGACTTGCCTTCCTTCACGAGGAAGTTAAACCACATATCATCCACAGAGATATTAAAGCAAGTAATATTCTACTGGACAAGAACTTAACGCCAAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCGGATTACGCGACTCATGTTAGTACACGTGTTGCTGGAACAATTGGTTATCTAGCTCCAGAGTACGCCATAATGGGCCATCTAACGAGAAAGTCTGATATATATGGCTTCGGTGTTTTGTTGATGGAGATAGTTACTGGGAGGTGTAACACAAACAGGCGATTGCCTGCTGAAGAACAGTACCTTCTTCTGAGGGTATGGGAGCATTATCAGAGAGGGAATTTGGATGAAATGTTAGACTCATCGATGGGTGGAGATTTCAATGTAAATGAGATTTGTAAAGTCTTAAAGATCAGTCTTCATTGCACCCAAGAGTTTCCAAAACTTCGACCATCTATGTCAATTGTCGTCAAGATGTTAACAGGCGAAATAGATGTTGATGATAAATCTATCTCACAACCAGGATTACATCCCGAGTTCATAAATAATAAAGATGGGGAAGGCAAGAAAAATGAGTTCGATTCTAAGGGGACATCTAGCTCTACTGGGTTAGGGAAGCTAGTTAATTCATCTTCGTCTTCAGAGAACACCACCACCTCATATGCTCCATTGTAA 1158 40.16 MARFCFCIPKSGASSTKQTVGVDNIDEEVSNIENVHLYSYKELMTATGNFSPANKIGQGGFGPVYKGRLKNGSMAAIKVLSAESIQGVREFLTEINVITDIEHENLVKLYGCCIEGNNRILVYGYLENNSLAQTLLGEGHSSIQFNWQTRHKICVGIARGLAFLHEEVKPHIIHRDIKASNILLDKNLTPKISDFGLAKLIPDYATHVSTRVAGTIGYLAPEYAIMGHLTRKSDIYGFGVLLMEIVTGRCNTNRRLPAEEQYLLLRVWEHYQRGNLDEMLDSSMGGDFNVNEICKVLKISLHCTQEFPKLRPSMSIVVKMLTGEIDVDDKSISQPGLHPEFINNKDGEGKKNEFDSKGTSSSTGLGKLVNSSSSSENTTTSYAPL 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37630529 37633169 + Bda009331.1 Bda12g00820 17835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00820 385 CDD STKc_IRAK 56 323 - -
Bda12g00820 385 SMART serkin_6 50 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00820 385 SUPERFAMILY Protein kinase-like (PK-like) 31 321 IPR011009 -
Bda12g00820 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Bda12g00820 385 Pfam Protein tyrosine and serine/threonine kinase 54 320 IPR001245 GO:0004672|GO:0006468
Bda12g00820 385 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 4 374 - -
Bda12g00820 385 Gene3D Transferase(Phosphotransferase) domain 1 126 333 - -
Bda12g00820 385 Gene3D Phosphorylase Kinase; domain 1 20 125 - -
Bda12g00820 385 MobiDBLite consensus disorder prediction 356 385 - -
Bda12g00820 385 ProSiteProfiles Protein kinase domain profile. 50 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00820 385 MobiDBLite consensus disorder prediction 329 385 - -
Bda12g00820 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01723 Bda-Chr3:56707656 Bda12g00820 Bda-Chr12:37630529 1.15E-124 dispersed
Bda12g00776 Bda-Chr12:36466749 Bda12g00820 Bda-Chr12:37630529 4.34E-162 dispersed
Bda12g00820 Bda-Chr12:37630529 Bda15g00043 Bda-Chr15:1916344 5.05E-108 dispersed
Bda12g00813 Bda-Chr12:37532606 Bda12g00820 Bda-Chr12:37630529 4.29E-109 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69974 PF07714 PK_Tyr_Ser-Thr 1.50E-45 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00820 - - jre:109012384 508.064