Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00828 ATGGACTTCTTCCCTGCCAGAACTCGAAATCCCTCGCCCAAATATCAGAAGAAAAGATTGACGGAAGAGCAAGTAAGGATTCTCGACCTTAATTTCGATCCCAACAAGAAGCTCGAACCAGACCACAAGCTTCACCTAGCCAACCGGATCGGCATCCCGCCCAAACAGGTCGCGATTTGGTTCCAGAACAAGCGCGCCAGGGTCAAGGCGCAGAGGCTTGATCATGACCATACGGCGCTGCAATTCATGCTGGATCAAGTTTCAGCGGAGAAGAAGCGGCTGGAGAACGATGTCGAGAGGCTGAAGCAACAGCTGGAAATGACTAAGAATCTGATCCGCGACTCTTGTAAGTTCAGCCAAACAGGAAATTCGGGCTTCTCTTGCGCATCTTCTTCCTTCTCCGATGAAGGCATGAGCCCTAATTTTCATGGCGATTTGAAGTTGAGATTGGACGACGGCGATGTTCTGCAAATTGACGAGGAGCTCTACGCCTTCTTGATTGGCGTGAATGGACGACGCAGTTCCTCTGGCAATTGA 537 50.47 MDFFPARTRNPSPKYQKKRLTEEQVRILDLNFDPNKKLEPDHKLHLANRIGIPPKQVAIWFQNKRARVKAQRLDHDHTALQFMLDQVSAEKKRLENDVERLKQQLEMTKNLIRDSCKFSQTGNSGFSCASSSFSDEGMSPNFHGDLKLRLDDGDVLQIDEELYAFLIGVNGRRSSSGN 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37839919 37840455 - Bda009344.1 Bda12g00828 17843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00828 178 ProSitePatterns 'Homeobox' domain signature. 46 69 IPR017970 GO:0000981|GO:0006355
Bda12g00828 178 Coils Coil 84 111 - -
Bda12g00828 178 CDD homeodomain 14 72 IPR001356 GO:0003677
Bda12g00828 178 Gene3D - 8 77 - -
Bda12g00828 178 SUPERFAMILY Homeodomain-like 8 71 IPR009057 -
Bda12g00828 178 SMART HOX_1 13 75 IPR001356 GO:0003677
Bda12g00828 178 ProSiteProfiles 'Homeobox' domain profile. 11 71 IPR001356 GO:0003677
Bda12g00828 178 Pfam Homeodomain 16 69 IPR001356 GO:0003677
Bda12g00828 178 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 12 173 - -
Bda12g00828 178 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 173 IPR045224 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00828 - - - qsu:112000295 142.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00828 Bda-Chr12:37839919 Bda14g01152 Bda-Chr14:10700030 1.26E-20 dispersed
Bda12g00828 Bda-Chr12:37839919 Bda12g00831 Bda-Chr12:37909264 2.76E-133 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g172 . . . . Bpe09g00244 . . . . . Cma01g01231 . Car01g01052 . Sed04g2426 . Cpe02g00685 Bhi09g03470 Tan01g4359 Cmetu07g1823 . Hepe01g1414 . . Cla11g01732 Cam11g1801 Cec11g1822 Cco11g1828 Clacu11g1960 Cmu11g1770 . . . . . Lsi04g02041 Csa04g02311 Chy07g00047 Cme07g00565 . . . Bda12g00828 . . Bma07g01160 . . Cmo01g01284 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017283 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16805 PF00046 Homeodomain 7.40E-14 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00828 Bda_Chr12 FPKM 3.414259 2.779344 7.230667 6.797946 11.547181 8.286097 11.642191 1.563926 2.36123