Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00836 ATGTTTTTATTTTATTTTTTTATTCTTTTCTTGGTAGTTGAAATCTTTAAACTGCTCCTCGGACCTCGCATAATCAATAATTGGAGAGCGAAGAACACGAGAAAAAAAAGGGGAGCAAACATGGGCAGTAGGAACCCATCTCTTCTGGAAGTTAGTCTGGTTGAAGACGAAGAAGAAAATGGCGGGGAAGAACAAGAAGACGAAGAGGGAAAGGGTTTAAAATGGTGGAATACCCATGTATTGGATTTAAAGGAGGCCAAGACCCAAATCGTGTTTTCGCTTCCGATGATTCTCACAAATGTGTTTTACTATTTGATTCCTCTGGTTTCCGTCATGTTCGCCGGCCACCTCGGCGAGCTTGACCTCGCCGGAGCTACTCTTGCTAACTCTTGGGCCACTGTCAGTGGCTTTGCTTTCATGATAGGTTCGAGCGGAGCTCTTGAAACGCTATGTGGCCAAGCATTCGGTGCGAAATGCTACAGAAATCTCGGGTTATATCTCCAAGCCTCTTGTCTCATATCATTCTTTTTCTCTATCCTCATTTCCGTCTTGTGGTTTTACACGGAGCCGGTGTTGATTTTACTTCATCAAGAACCAAAGATTTCGAAGAAAGCCGGTTTATACATGAAGTTTCTAATTCCTGGATTAGTAGCCTATGGATTCTTACAAAATGTCGTGAGATTTCTTCAGACACAATCCGAGGTTATGCCACTGCTTATCTTTTCAGCTCTTCCATTGGCGGCTCACATTGCCATTGCATATTTGTTGGTTAATTTCTCTTCGATGGGATTCGAGGGAGCTTCATTGGCTGCCTCTGTTACTATATGGATCGCCTTTCTGGTTTTGGCGATTTATATGCTTAAATCGAAGAAGTTTGAGCATACGTGGGATGGATTTTCAATCGAGTCGTTTCGATATGTTTTCACGAGTCTTAAACTAGCTCTTCCGTCGGCAGCCATGGTTTGTCTGGAGTACTGGGCGTTCGAGATTCTCGTGCTCTTAGCCGGATTGATGCCTAACCCAGAAACAACAACTTCACTAATTGCAATGTGTGTAAACACGGAAGCCATTGCCTATATGAGCACCTTTGGCCTTAGTGCTGCTGCTAGCACGAGAGTGTCGAATGAGATGGGAGCATGGCAATCTAAAGCAAGCAAAGGCAGCCATGGCTGTGACTCTCAAGCTCTCCCTCCTCCTCGCATTTGCCATTGTTTTAGCACTTGGATTAGGCCATAA 1236 44.17 MFLFYFFILFLVVEIFKLLLGPRIINNWRAKNTRKKRGANMGSRNPSLLEVSLVEDEEENGGEEQEDEEGKGLKWWNTHVLDLKEAKTQIVFSLPMILTNVFYYLIPLVSVMFAGHLGELDLAGATLANSWATVSGFAFMIGSSGALETLCGQAFGAKCYRNLGLYLQASCLISFFFSILISVLWFYTEPVLILLHQEPKISKKAGLYMKFLIPGLVAYGFLQNVVRFLQTQSEVMPLLIFSALPLAAHIAIAYLLVNFSSMGFEGASLAASVTIWIAFLVLAIYMLKSKKFEHTWDGFSIESFRYVFTSLKLALPSAAMVCLEYWAFEILVLLAGLMPNPETTTSLIAMCVNTEAIAYMSTFGLSAAASTRVSNEMGAWQSKASKGSHGCDSQALPPPRICHCFSTWIRP 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38003173 38006070 + Bda009354.1 Bda12g00836 17851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00836 411 Pfam MatE 95 255 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda12g00836 411 Pfam MatE 316 382 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda12g00836 411 TIGRFAM matE: MATE efflux family protein 95 383 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bda12g00836 411 PANTHER MULTIDRUG RESISTANCE PROTEIN 53 379 - -
Bda12g00836 411 CDD MATE_eukaryotic 85 386 IPR045069 GO:0042910|GO:1990961
Bda12g00836 411 PANTHER PROTEIN DETOXIFICATION 53 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00836 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - twl:119985229 475.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00836 Bda-Chr12:38003173 Bda14g01477 Bda-Chr14:21882601 3.43E-88 dispersed
Bda12g00836 Bda-Chr12:38003173 Bda11g00997 Bda-Chr11:9752327 1.43E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00836 Bda_Chr12 FPKM 0.892886 0.510046 0.120792 0.198042 0.177549 0.346013 0.239546 0.15021 0.132725