Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00837 ATGATAAAAGCCGACAGGAAAATAACTGCCTTGAAACAACTGCAAGGTCACATATGGAGAACTGGTTTTGAACAGGGTGAACTGGAGGGAGTAGTCTTTGAGGACGTACCAGTAGCTCTTGAAAGGTGGCATGCTTTGGGCATAAAGGTCTACATATACTCCAGCGGTAGCAGGCTGGCGCAAAGGCTTTTATTCGGAAAGACCAAGTATGGCGATTTAAGAAAATACTTATCCGGGTTTTTCGATACGACCGTGGGGAACAAAAGAGAAGTAAACAGCTATGTTGAAATCTCAGAATTCCTTGGCGTCAAGCCATCAGAGATTCTGTTTCTAACTGATGTCTTTCAAGAAGCTACAGCAGCAAAGGCTGCAGGATTGGAATCGATTATTTCTATCCGACCCGGAAATGGACCTCTTCCGGATAACCATGGATTCAAGACAATCACTTCGTTCTCAGAAATCTAA 465 43.66 MIKADRKITALKQLQGHIWRTGFEQGELEGVVFEDVPVALERWHALGIKVYIYSSGSRLAQRLLFGKTKYGDLRKYLSGFFDTTVGNKREVNSYVEISEFLGVKPSEILFLTDVFQEATAAKAAGLESIISIRPGNGPLPDNHGFKTITSFSEI 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38012738 38014093 + Bda009355.1 Bda12g00837 17852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00837 154 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 1 154 - -
Bda12g00837 154 SUPERFAMILY HAD-like 2 154 IPR036412 -
Bda12g00837 154 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2 152 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bda12g00837 154 Gene3D - 24 154 IPR023214 -
Bda12g00837 154 Gene3D - 1 23 - -
Bda12g00837 154 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 1 154 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00837 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - gmx:100796209 270.781
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00837 Bda_Chr12 FPKM 11.996616 13.337135 0.078001 0.147615 0.076768 0.095708 0.073822 0.24095 0.0