Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00838 ATGGCAAGACGAGCACTGTCAAGAAGAGAGGTCCTCCATACAAATTTTCTTACCCCGCCTGTCTTGAAAGAGTCTATGATAGCTATAGGAAAACTAGTCGATACAAAAGCGATTGTTCAGGGAGGATATCCACAGGCTGAACGATGTCGAATTTCTGTTGGACATCCAGATGACTTGACAAGCGATCCAGATATAATTGCAGGATTGAGTATTACAGGCAACTTTGGATTTCAATCATGTTCACATGGGGACTTTCTTGGGTCAATTCTTGGTACAGGAATTGCTAGAGAGAAAGTTGGTGATATCCTCTTGCAGGGAAAGAGTGCACAAGTCCTAGTTGTTCCTGAACTTGTTGACTTCCTTACATCATCATTGGACAAGGTTGGCAATGTTCCTGTATATTGTACAAGAATACCATTGAATTCTCTTGATTATGAACCACCACACAGAACAAAGTCATTTAAAACCGTAGAATCGTCCTTAAGAGTGGATGCTCTAGCCAGCGCAGGATTTAAGATTTCACGATCAAAACTAGTGGAGATGATTAGCAATGGCGACGTTCGAGTCAACTGGACACCCGTGACTAAAAATGGAGCGGCTCTCAAGACAGGCGATATGGTTTCTGTCAGCGGGAAAGGAAGACTAAAGATTGGAGAAATAAACTCTACGAAGAGAGGGAAATTCGCTGTTGAGCTCATTCGATACATTTAA 711 42.19 MARRALSRREVLHTNFLTPPVLKESMIAIGKLVDTKAIVQGGYPQAERCRISVGHPDDLTSDPDIIAGLSITGNFGFQSCSHGDFLGSILGTGIAREKVGDILLQGKSAQVLVVPELVDFLTSSLDKVGNVPVYCTRIPLNSLDYEPPHRTKSFKTVESSLRVDALASAGFKISRSKLVEMISNGDVRVNWTPVTKNGAALKTGDMVSVSGKGRLKIGEINSTKRGKFAVELIRYI 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38014588 38018165 - Bda009356.1 Bda12g00838 17853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00838 236 Pfam Putative RNA-binding domain in YlmH 70 141 IPR040591 -
Bda12g00838 236 Pfam S4 domain 165 207 IPR002942 GO:0003723
Bda12g00838 236 ProSiteProfiles S4 RNA-binding domain profile. 161 227 - -
Bda12g00838 236 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 1 236 - -
Bda12g00838 236 TIGRFAM PS_II_S4: photosystem II S4 domain protein 1 234 IPR017506 -
Bda12g00838 236 Gene3D - 63 144 IPR012677 -
Bda12g00838 236 SUPERFAMILY Alpha-L RNA-binding motif 40 223 - -
Bda12g00838 236 CDD S4 162 216 - -
Bda12g00838 236 Gene3D - 155 212 IPR036986 GO:0003723
Bda12g00838 236 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 1 236 - -
Bda12g00838 236 SMART s4_6 161 221 IPR002942 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00838 - - - zju:107422429 383.259
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00838 Bda_Chr12 FPKM 10.207941 12.087129 12.889982 13.463611 14.988773 12.848886 15.052785 20.875546 23.717707