Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00859 ATGGCGATACCATTAAATGTTTCCTTCGTTAAGATCTACTTGTTGATTGCGTATCCAATATTGCAGAAACTCAATCAGCAGCGCGATATTCATAGGAATTTATGCTCGTTATGCTTGGAAAAGGGAAAGAAGAAAGTTGAGAGCTTGATTACTATTATTCTTCTATGTATCCAAATTTCTTCTCCATTGCCTTTGCTAAATGTGGACTTTTGGTCTATTCATCCTGCCAAGGCAGTACTTTATTCTCCCGACACCAAAGTTCCAAGAACAGGGGAACTTGCCTTAAGGAGAGCTATCCCTGCAAATACGAACATGAAGGCCATACAGGATTCTTTGGAGGAATTATCGTATTTACTAAGAATTCCGCAAAGAAAACCATATGGAACAATGGAAACTAATGTGAAGAAAGCTCTAAAGATCGCAGTTGATGAAAAGGATTCCATTTTGGGAGCCATACAAAATGATATGAAGGAAAAGGGTTCTACCCTCCATGCATCTCTTATCGATGGAAAGGGAGGTTTGAAAACACTCCTCCAATTCATCAAGGATCAAGATCCTGATAAAGTATCTGTATGCCTGGCATCTTCATTGGATACTGTTGCAGAGCTCGAGTTACTTCAGGTTGAATGCGACTCTTTAAATGAAGTTTATATCAATTGTTCTAGGGATCAAAATCAATATTTCATAATGATTTGTAGACTAACAGGGAGAGGAATTGTTGAATTTACCGTTGAAAAGGGAGATGGTTCAACATTTTCTCCAGCAGCAGGCGGTGAACCGAGAAAAACAGCCACAATTCAGGTTGTTATAGATGGATATTCTACGCCATTAACGTCTGGGAATTTTGCCAAACTGGTGATTGATGGAGCATATGATGGAACAAAACTTAACTGTGCTAGCCAAGCTATTCTCTCCTACAATGGAGTGGATAAGGACATCCCATATAACATTCCTCTCGAAATAATGCCGTCTGGCCAGTTCGAGCCATTATATAGAACATTCCTCAGTGTGCAGGATGGGGAATTACCAGTTCTTCCACTCTCTGTGTACGGAGCAGTCGCAATGGCGCATAGTGAAGTGTCCGAAGAGTATTCATCGCCGTATCAGTTTTTCTTCTATCTCTACGATAAACGAAATTCTGGCTTGGGAGGATTATCGTTCGATGAGGGTCAATTTTCCGTTTTCGGATATACAACTGCAGGTAGAGACATTCTTCCACAGATAAAAACTGGGGACGTGATCAAGTCTGCAAAGCTAGTTGAAGGTCGAGATCGGCTTCAATTGCCTATCCCCTTGTCTTTTCAATCCATTGTGAGAAAATGA 1323 40.59 MAIPLNVSFVKIYLLIAYPILQKLNQQRDIHRNLCSLCLEKGKKKVESLITIILLCIQISSPLPLLNVDFWSIHPAKAVLYSPDTKVPRTGELALRRAIPANTNMKAIQDSLEELSYLLRIPQRKPYGTMETNVKKALKIAVDEKDSILGAIQNDMKEKGSTLHASLIDGKGGLKTLLQFIKDQDPDKVSVCLASSLDTVAELELLQVECDSLNEVYINCSRDQNQYFIMICRLTGRGIVEFTVEKGDGSTFSPAAGGEPRKTATIQVVIDGYSTPLTSGNFAKLVIDGAYDGTKLNCASQAILSYNGVDKDIPYNIPLEIMPSGQFEPLYRTFLSVQDGELPVLPLSVYGAVAMAHSEVSEEYSSPYQFFFYLYDKRNSGLGGLSFDEGQFSVFGYTTAGRDILPQIKTGDVIKSAKLVEGRDRLQLPIPLSFQSIVRK 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38863798 38868561 + Bda033186 Bda12g00859 17874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00859 440 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 251 409 IPR002130 GO:0000413|GO:0003755
Bda12g00859 440 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 265 415 IPR002130 GO:0000413|GO:0003755
Bda12g00859 440 SUPERFAMILY Cyclophilin-like 265 416 IPR029000 -
Bda12g00859 440 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP37, CHLOROPLASTIC 22 429 IPR044259 -
Bda12g00859 440 Gene3D - 261 425 IPR029000 -
Bda12g00859 440 Gene3D - 101 209 IPR023222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00859 - - - rcu:8271141 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01270 Bda-Chr1:48127872 Bda12g00859 Bda-Chr12:38863798 4.62E-10 dispersed
Bda12g00859 Bda-Chr12:38863798 Bda13g01659 Bda-Chr13:40030766 4.09E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g274 . . . . . . . Bma13g00966 . . . . . . . . . . . . . . . . Cla10g00621 Cam10g0614 Cec10g0642 Cco10g0617 Clacu10g0644 Cmu10g1462 Cre10g0855 . . Cone14ag1081 Cone15ag1072 . Csa03g00607 . . . . . Bda12g00859 . . . . . . . . . . Car16g00809 . . . . . . . . . . . . . . . . Lsi05g00699 . Chy06g01716 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007260 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00859 Bda_Chr12 FPKM 91.004791 91.486542 142.289398 146.159103 99.41703 92.399574 95.759415 89.315132 87.327919