Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00867 ATGCCGGTGTGTCCGCCATCGTCGTCCTCCTCCTCTTCTGGCCCTTCATCTCTGAGCAACACAAAGTTCTGGATCGTACATGGTATCCTCGCCGGATTCGCTATTGCAGCGGCGGTAGGAGCTCGAGCGTATTTGGGAAAATCTAAGAAGTTTCGGAGCAGGGTGGTGGGGATAATTCCTGCCCGTTTTGCATCCTCGCGCTTTAATGGGAAGCCTCTGGTTGAGATCCTTGGAAAACCCATGATCCAGAGAACATGGGAAAGAGCCAAATTGGCAAGCACATTGGATCATATTGTTGTTGCAACCGATGACGAAAGGATTGCAGAGTGTTGTCAACAATTTGGTGCTGATGTCATAATGACGTCAGAATCTTGCCAAAATGGCACCGAGCGATGTAATGAAGCACTTAAAAAAATGGAGAAGAAGTATGATATTGTTGTCAATATTCAAGGGGACGAACCTCTTCTTGAACCTGAGATAATAGATGGAGTCGTTAAAGCTTTACAGGCAGCTCCAGATGCTGTGTTTAGTACAGCTGTCACACCTTTAAAGCCTGAAGATGCATTTGATCCAAATCGAGTGAAATGTGTAGTGGACAATCGCGGCTATGCTATATATTTTTCAAGGGGATTGATTCCTTTTAACAAGTCAGGGAATATCAATCCCCATTTTTCATATATGCTTCACCTTGGTATTCAGAGCTATGATGCAGAATTTCTAAGCTTATATCCAGAACTTCAGCCTACTCCTTTGCAACTGGAAGAGGATCTGGAACAACTGAAAGTCTTAGAAAATGGGTACAAAATGAAGGTGATAATGGTTGATCATGAGGCACATGGGGTTGACGTCCCGGAAGATGTCGAAAAGATTGAATGTTTAATGCGAGAACAGAACTTGTGCTAG 903 43.96 MPVCPPSSSSSSSGPSSLSNTKFWIVHGILAGFAIAAAVGARAYLGKSKKFRSRVVGIIPARFASSRFNGKPLVEILGKPMIQRTWERAKLASTLDHIVVATDDERIAECCQQFGADVIMTSESCQNGTERCNEALKKMEKKYDIVVNIQGDEPLLEPEIIDGVVKALQAAPDAVFSTAVTPLKPEDAFDPNRVKCVVDNRGYAIYFSRGLIPFNKSGNINPHFSYMLHLGIQSYDAEFLSLYPELQPTPLQLEEDLEQLKVLENGYKMKVIMVDHEAHGVDVPEDVEKIECLMREQNLC 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39176397 39179789 - Bda009393.1 Bda12g00867 17882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00867 300 TIGRFAM kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 57 288 IPR004528 GO:0008690
Bda12g00867 300 CDD CMP-KDO-Synthetase 54 291 IPR004528 GO:0008690
Bda12g00867 300 SUPERFAMILY Nucleotide-diphospho-sugar transferases 55 293 IPR029044 -
Bda12g00867 300 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 16 299 - -
Bda12g00867 300 Pfam Cytidylyltransferase 57 267 IPR003329 -
Bda12g00867 300 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 45 295 IPR029044 -
Bda12g00867 300 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 53 295 IPR004528 GO:0008690
Bda12g00867 300 PANTHER BNAA05G35640D PROTEIN 16 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00867 K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] - tcc:18593937 502.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01239 Bda-Chr4:62996795 Bda12g00867 Bda-Chr12:39176397 2.69E-31 dispersed
Bda12g00867 Bda-Chr12:39176397 Bda13g01052 Bda-Chr13:12241028 2.84E-20 dispersed
Bda12g00864 Bda-Chr12:39075019 Bda12g00867 Bda-Chr12:39176397 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g233 . . . . . . . . Cmo16g00844 Cmo04g00971 . . . . . . . . . . . . . . Cla10g00648 Cam10g0644 Cec10g0665 Cco10g0640 Clacu10g0667 Cmu10g1494 Cre10g0875 . . . Cone15ag1058 . Csa03g00629 . . . . . Bda12g00867 . . . . . . . Cma04g00905 Cma16g00781 Car04g00848 . Cpe14g00680 . . . . . . . . . . . . . . . Lsi05g00716 . Chy06g01699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005144 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00867 Bda_Chr12 FPKM 2.038002 2.201641 14.859278 15.837529 24.452486 27.424044 25.001268 5.890731 5.92092