Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00870 ATGCTCTTCTCTTTCGATTGCTCAGACAACAAGGTTACAAGGTTTCAAGTGGCAAATATATTCAAGAAATACATTGACGATGAAGGAAAATTCAAGGAATACCTAGCTGAGGATGTTCATGGACTATTGAGTTTGTATGAAGTAGCATATTTCAGTGTTCATGGGGAAGACATACTTGATGAAGCACTAAACTTTGTTACTGGAAAATTGAAAGCCATTGTAGGCCATTTAAGCTATCCTCTTTCTGAAGAAGTAACGTATGCCCTTAAGCATCCTCTCCGACGAGGCATGCTGAGGCTCGAAGCACGGCATTTTATGTCGATTTATAATGAAGATCCATCTCACAACAAGGCCCTTCTTATTTTTGCAAAACTAGATTATAATATACTGCAAAAACTTCACTTGGAGGAGCTTGCTGATGTGTCTAGGTGGTGGAAAGATTTGGACTTTCCAACCAAGTTACCTTTTGCAAGAGATAGAATTGCTGAATGTTACTTCTGGACAATAATGACACTACCTGAGCGTCAATACTCAGTTGGTAGGAGGTTCATGGCGAAATTATATCAACTGATATCGATTCTAGATGACATATATGATCTACATGGCACACCCGAAGAGCTTAAACTCTTAACTGATGCTATCGAGAGGTGGGATGTAGGTGCTCAAGACCAACTCCCAGATAGCCTCAAGTTCTTCTACCTAAATATATTGCTCCTCTTTTCCAATTTCGAAAGAGACCAAGGAATCGAGAATGAATCCTTCCGAATGCTTCATGCAAAAGAGGGGGTGAAGGGACAAGCAAAGGCCTATTTTGGGGAAGCAAATTGGCGACATGCAGGATATATACCCTCTATTGATGAGTATTATGAATTTGCTTTGCCTTCCACTGACTACCATTTATTTTCAGCCAATGCCTACCTTTGCATGGGAGATGCAATTCCAAAGGAGGCTTTTCATTGGTTATTCACACGACCAAAAATTCTTCGAGAGGTAGAAATCATTGGGAGGCTCATGAATGACATTGTTGAATATAAGATTGAGCCAGTTGGAGGGCATGAACCATCTGCACAAAAATGCTACATCAAACAATATGGGGTTTCGGAAGAGAAGGCATACACTGCCTTACAAAAGCAAGTAGACGACGCTTGGAAATACATAAATGATTGTTGCCTCAAAACTACTGAGTTTTCCATGGCTGTGTTATCGCCTATGGTCAATCTTGCTAGGGCAAGCCATGTCTATTACAGGGATGAAGATGGATACACTATTGGAGGAGGACAAACGAAGCTTTACATCACTTCTTTGGTTCTCGAACCTGTTCCACTTTGA 1329 40.71 MLFSFDCSDNKVTRFQVANIFKKYIDDEGKFKEYLAEDVHGLLSLYEVAYFSVHGEDILDEALNFVTGKLKAIVGHLSYPLSEEVTYALKHPLRRGMLRLEARHFMSIYNEDPSHNKALLIFAKLDYNILQKLHLEELADVSRWWKDLDFPTKLPFARDRIAECYFWTIMTLPERQYSVGRRFMAKLYQLISILDDIYDLHGTPEELKLLTDAIERWDVGAQDQLPDSLKFFYLNILLLFSNFERDQGIENESFRMLHAKEGVKGQAKAYFGEANWRHAGYIPSIDEYYEFALPSTDYHLFSANAYLCMGDAIPKEAFHWLFTRPKILREVEIIGRLMNDIVEYKIEPVGGHEPSAQKCYIKQYGVSEEKAYTALQKQVDDAWKYINDCCLKTTEFSMAVLSPMVNLARASHVYYRDEDGYTIGGGQTKLYITSLVLEPVPL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39301177 39302940 - Bda009399.2 Bda12g00870 17885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00870 442 SFLD Isoprenoid Synthase Type I 115 440 - -
Bda12g00870 442 CDD Terpene_cyclase_plant_C1 20 439 IPR044814 GO:0010333|GO:0016102
Bda12g00870 442 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 19 115 IPR008930 -
Bda12g00870 442 Pfam Terpene synthase, N-terminal domain 19 89 IPR001906 GO:0010333|GO:0016829
Bda12g00870 442 Pfam Terpene synthase family, metal binding domain 120 384 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bda12g00870 442 SUPERFAMILY Terpenoid synthases 115 440 IPR008949 -
Bda12g00870 442 Gene3D Farnesyl Diphosphate Synthase 116 429 IPR008949 -
Bda12g00870 442 PANTHER OS04G0344100 PROTEIN-RELATED 19 424 - -
Bda12g00870 442 SFLD Terpene Cyclase Like 1 C Terminal Domain 115 440 IPR034741 -
Bda12g00870 442 PANTHER TERPENE SYNTHASE 2-RELATED 19 424 - -
Bda12g00870 442 Gene3D - 18 115 IPR036965 GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00870 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - jre:109018572 440.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00319 Bda-Chr4:47073170 Bda12g00870 Bda-Chr12:39301177 0 dispersed
Bda09g00763 Bda-Chr9:13816797 Bda12g00870 Bda-Chr12:39301177 0 dispersed
Bda12g00852 Bda-Chr12:38252539 Bda12g00870 Bda-Chr12:39301177 9.99E-132 dispersed
Bda12g00853 Bda-Chr12:38315317 Bda12g00870 Bda-Chr12:39301177 4.92E-162 dispersed
Bda12g00870 Bda-Chr12:39301177 Bda07g00405 Bda-Chr7:5155584 7.48E-120 dispersed
Bda12g00870 Bda-Chr12:39301177 Bda05g00743 Bda-Chr5:55839805 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00921 . . Bda12g00870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01688 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00870 Bda_Chr12 FPKM 22.184128 23.472986 28.426294 28.506207 19.000641 18.06856 21.378 36.078945 37.061371