Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00874 TTGTGCTACAGGTACTATTCCATGTATGGACACGTCGAAAGACTTGCTGAAGAAATAAAGAAAGGAGCAGCATCTGTTGAAGGTGTGGAAGCCAAATTATGGCAGGTTCCAGAGACATTGCCCCAGGAGGTTCTTATGAAGATGAGCGCACCTCCGAAGAGTGATACACCGATTATCACTCCTAATGAGCTTGCTGAAGCTGATGGGTTTATTTTTGGATTTCCAACGAGATTTGGAATGATGGCTGCTCAATTCAAAGCCTTCCTGGATGCAACCGGAGGCCTCTGGAGAACACAACAGCTGGCAGGCAAGCCGGCCGGAATCTTTTACAGCACTGGGTCCCAGGGAGGTGGACAGGAAACCACTCCATTGACTGCCATAACTCAGCTGGTTCACCACGGAATAATATTTGTTCCGATTGGCTACACATTTGGAGCTGGAATGTTCGAAATGGAATCAGTCAAAGGTGGAAGTCCCTACGGTGCAGGTACCTTCGCAGGCGATGGGTCTAGACAGCCAACGGAGCTGGAGTTGGAGCAAGCCTTTCACCAAGGTAAGTACATTGCCGCCATCACTAAGAAGCTCAAAGGAGCAGCTTAA 600 48.83 LCYRYYSMYGHVERLAEEIKKGAASVEGVEAKLWQVPETLPQEVLMKMSAPPKSDTPIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGIIFVPIGYTFGAGMFEMESVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKYIAAITKKLKGAA 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39439736 39441457 + Bda009404.1 Bda12g00874 17889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00874 199 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 5 195 IPR010089 GO:0003955|GO:0010181
Bda12g00874 199 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 3 199 - -
Bda12g00874 199 Pfam NADPH-dependent FMN reductase 13 122 IPR005025 GO:0016491
Bda12g00874 199 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 3 199 - -
Bda12g00874 199 Gene3D - 4 197 IPR029039 -
Bda12g00874 199 SUPERFAMILY Flavoproteins 5 196 IPR029039 -
Bda12g00874 199 ProSiteProfiles Flavodoxin-like domain profile. 1 188 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00874 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - jre:109014187 373.244
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00749 Bda12g00874 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00567 Bda-Chr2:46490772 Bda12g00874 Bda-Chr12:39439736 4.86E-120 dispersed
Bda09g01287 Bda-Chr9:44639087 Bda12g00874 Bda-Chr12:39439736 1.44E-81 dispersed
Bda02g00851 Bda-Chr2:49003358 Bda12g00874 Bda-Chr12:39439736 5.81E-98 transposed
Bda04g00065 Bda-Chr4:1088592 Bda12g00874 Bda-Chr12:39439736 7.21E-94 transposed
Bda06g00948 Bda-Chr6:26139457 Bda12g00874 Bda-Chr12:39439736 7.22E-86 transposed
Bda13g00909 Bda-Chr13:10828696 Bda12g00874 Bda-Chr12:39439736 7.13E-49 transposed
Bda12g00874 Bda-Chr12:39439736 Bda05g00749 Bda-Chr5:55968814 2.81E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00874 Bda_Chr12 FPKM 6.371582 4.803712 2.835644 3.157489 2.22506 2.227412 2.07767 2.234985 2.465709