Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00875 ATGGCGGATGAGTTTCAGACGAGTGGAAGCTGGTGGGAGTCGTCCAGAAACAGGTTTGAAAGAGGGATATCTCCATCTTCTTCAGCTCTGAGTAGCTTAGGGAGCTATGGGTGGCCTGCAGAAATGGCGGATATGAAAGCCAGGTCGTCGATGGAGTCTGTTTCGGTTTCTAGCAGTTCTTCTTTCGTCTTCCATGATGCCCAGAAGCTTCAAGATTCTGATTCTTCAGCTGGTGATCCAAATTTGCAGATGATGGGTCTAGGTCTTTCTTCCCCCACCATTGATTGGAACCAAGCTTTACTTCTGGGAGAGAAGTCTGAAACCAGTTTCCGATCGATGCTTCAAGATAACATGAATTCAAACAGCAATTTTCACCAAGAAAGTGGGCAAAATCAATGGAGGGAGAGATTATTTTCTGGAGATAATTCATCAGAGGCCGAGTTTAAGCCATTGAATCGAGGTTTTTCGTTGGATCAACAACAGTTCAGCGGTCATAACTACAGTGGAGTTGATTCCACAGCAACATGTTTAGGGTTATCTTCCAGCTTTCAAATGGATTCATCAGCTTTGTATGGAAATCCAACAACAATATTACAAGGATTCGAAAACCAGACGCAGCAAAACTCAAACTCCATGGGATTCTCTTATGGCGGAAATTTTCTCAAGAATTCGAATGAAATTCTGCCTTCTTCTTGGTCCTCTTCTAAAGTTCCTCAGTGTTTAAGAGCTTCATCTCCTAAACAACAGACCCACCATAGCCATTTGCATTTCTCTAACAATGCTCCCTTCTGGAACGCTTCAGAAGCCGCCATGAAAGACACCAAGACAAGCTTTTTCCCTTCCCTGCAAACGCAATTTCACTCGCAATCGTTCGATGAAAAGCCCAAGCAGAATATATCTGAAACTCGTGACTCAGGAACTGGGGCAAAGAAAAGTGGGAGCGAACCCACTTCCAAAAGGCCAAGAAATGAAGCGCCATCGCCATTGCCAGCTTTCAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACTGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAGTTCCTACATGAACAAGTTAGTGTTTTAAGCACTCCATACATGAAAAATGGAGCTGCAATACAACATCAACAGAATTCTGATAAATCTAAGGAACAAGAAGGACCCAAGCAAGACCTTAGGAGCCGAGGGCTGTGTTTGGTGCCAGTTTCAAGCACATTCCCAGTAACTCATGAAAGCACAGTTGATTTTTGGACACCAACATTTGGAGGAACATTCAGATGA 1332 43.92 MADEFQTSGSWWESSRNRFERGISPSSSALSSLGSYGWPAEMADMKARSSMESVSVSSSSSFVFHDAQKLQDSDSSAGDPNLQMMGLGLSSPTIDWNQALLLGEKSETSFRSMLQDNMNSNSNFHQESGQNQWRERLFSGDNSSEAEFKPLNRGFSLDQQQFSGHNYSGVDSTATCLGLSSSFQMDSSALYGNPTTILQGFENQTQQNSNSMGFSYGGNFLKNSNEILPSSWSSSKVPQCLRASSPKQQTHHSHLHFSNNAPFWNASEAAMKDTKTSFFPSLQTQFHSQSFDEKPKQNISETRDSGTGAKKSGSEPTSKRPRNEAPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYMKNGAAIQHQQNSDKSKEQEGPKQDLRSRGLCLVPVSSTFPVTHESTVDFWTPTFGGTFR 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39446790 39449137 - Bda009405.1 Bda12g00875 17890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00875 443 MobiDBLite consensus disorder prediction 287 331 - -
Bda12g00875 443 CDD bHLH_AtbHLH_like 329 380 IPR045239 -
Bda12g00875 443 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 7 432 - -
Bda12g00875 443 MobiDBLite consensus disorder prediction 389 411 - -
Bda12g00875 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Bda12g00875 443 Gene3D - 333 401 IPR036638 GO:0046983
Bda12g00875 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 389 IPR036638 GO:0046983
Bda12g00875 443 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 432 - -
Bda12g00875 443 SMART finulus 334 378 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00875 - - - jre:109014219 575.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00748 Bda12g00875 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00568 Bda-Chr2:46494677 Bda12g00875 Bda-Chr12:39446790 1.12E-65 dispersed
Bda07g01554 Bda-Chr7:28818738 Bda12g00875 Bda-Chr12:39446790 4.84E-30 dispersed
Bda10g00820 Bda-Chr10:42604381 Bda12g00875 Bda-Chr12:39446790 3.95E-30 dispersed
Bda10g00824 Bda-Chr10:42642264 Bda12g00875 Bda-Chr12:39446790 5.54E-30 dispersed
Bda03g00963 Bda-Chr3:8714799 Bda12g00875 Bda-Chr12:39446790 1.63E-17 transposed
Bda13g00540 Bda-Chr13:6409167 Bda12g00875 Bda-Chr12:39446790 1.06E-31 transposed
Bda15g00841 Bda-Chr15:12886514 Bda12g00875 Bda-Chr12:39446790 3.94E-29 transposed
Bda12g00875 Bda-Chr12:39446790 Bda05g00748 Bda-Chr5:55964150 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00875 Bda_Chr12 FPKM 4.714756 4.048717 4.163947 4.735971 5.274147 3.588398 4.841864 3.95363 3.53277