Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00881 ATGGCTGCCATTACTGCGCTTCAGAGCTCCATGACCTCTCTTTCCCTCTCCTCCAACTCGTTCTTGGGCCAGAGATTTTCCCCTCTCTCTCTCTCGTCTTCTCCGGTTTGTTCCCTTCTCTCTGACCCTCTCCCCATTTCTTGTGCCATTTTCAGTTTGTCACTCCTAAAACGATGGGAGCGGAAGGAATGCAAGCCAAACAGCCTTCCGGTGCTACACAAAATGCACGTTAAGCTCGGAGACACGGTGAAGGTGATAACGGGACGCGATAAGGGTAAAACTGGGGAAATTACGAAGATCTTTAAACATAATAGCACTGTGGTCATAAAAGATCTGAACTTGAAGACCAAGCATGTCAAGAGCAGGGAAGAAGGTGAAAAAGGACAGATCATTAAGATTGAAGCACCGATTCACAGTTCGAATGTGATGCTTTATTCTAAGGAAAAGAATGTAGCGAGTCGAGTGGGTCATAAAATCCTTGAAGACGGAAAACGGGTTCGGTACCTCGTCAAAACGGGCGAAATTCTCGACAGTACGGAAAACTGGAAGAAACTAAAAGAAAGCAAGGAAAAAACTGAGGTAGCTACCACTTCC 594 45.96 MAAITALQSSMTSLSLSSNSFLGQRFSPLSLSSSPVCSLLSDPLPISCAIFSLSLLKRWERKECKPNSLPVLHKMHVKLGDTVKVITGRDKGKTGEITKIFKHNSTVVIKDLNLKTKHVKSREEGEKGQIIKIEAPIHSSNVMLYSKEKNVASRVGHKILEDGKRVRYLVKTGEILDSTENWKKLKESKEKTEVATTS 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39550628 39552822 + Bda033187 Bda12g00881 17896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00881 198 Hamap 50S ribosomal protein L24 [rplX]. 75 171 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bda12g00881 198 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 112 175 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bda12g00881 198 Pfam KOW motif 80 110 IPR005824 -
Bda12g00881 198 SMART kow_9 76 103 IPR005824 -
Bda12g00881 198 TIGRFAM rplX_bact: ribosomal protein uL24 74 176 IPR003256 GO:0003735|GO:0005840|GO:0006412
Bda12g00881 198 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 5 195 - -
Bda12g00881 198 SUPERFAMILY Translation proteins SH3-like domain 73 175 IPR008991 -
Bda12g00881 198 CDD KOW_RPL26 80 144 IPR041988 GO:0003723
Bda12g00881 198 Gene3D - 70 175 IPR014722 -
Bda12g00881 198 ProSitePatterns Ribosomal protein L24 signature. 80 97 IPR005825 GO:0003735|GO:0005840|GO:0006412
Bda12g00881 198 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 5 195 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00881 K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24 - csv:101209475 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00037 Bda-Chr11:464857 Bda12g00881 Bda-Chr12:39550628 9.77E-14 dispersed
Bda12g00881 Bda-Chr12:39550628 Bda04g01157 Bda-Chr4:62307830 4.48E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g407 . . . . Bpe09g00201 . . Bma13g01020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00800 . Bda12g00881 . . . . . . . . . . . Cpe14g00712 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012446 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00881 Bda_Chr12 FPKM 3.130268 5.432289 0.0 1.169888 1.889896 1.517027 2.140043 0.0 0.0