Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00883 CAGATGACTAGCAGAAAACCTGTTGATGTTCGGATGCAGGATCCGACGCCGAGAAAATGGTGTGTCTCGTTGGGAGAAGACGCATTCAAAAGGGTGTTGTCACAAGGCAATCCTATATTAAACAAGGTTTTTGGTGAAGGTTCATTGTTCAGTCCTTTGTTGTTCGGAAAATTTTTTGACCCTTCTGACGCCTTTCCACTATGGGAGTTTGAGGCCGATCTGTTGCTCTCTCATCTCCGGAGCTCCGGCAAATGCTCCGTTGATTGGCTTCAAACGGATCGAGACTATGGATTGAAAGCTGAATTGCCAGAAAGTGGAAAAGGCAATGCCCAAGTTTATGTTGAAAATGGGAAGATTCTAGAAATAAGTGGTCAGTTGAAGCAGCAAAGAGATCAATCAAAGACAAAGGACTGGACTTCCGGGCAGTGGTGGGAATATGGCTTTGTCCGGCGGCTTGAGTTGCCGGAAAATGCAGACTGGAGAAAAATGGAGGCATGGCTATGTAACGAAGCAATTTTGGAAATTAAAATCCCTAAATATGACACCAATCAAGGTGTAGAAGAAGCTCAAAATACTGAGGCCATGTAA 588 44.39 QMTSRKPVDVRMQDPTPRKWCVSLGEDAFKRVLSQGNPILNKVFGEGSLFSPLLFGKFFDPSDAFPLWEFEADLLLSHLRSSGKCSVDWLQTDRDYGLKAELPESGKGNAQVYVENGKILEISGQLKQQRDQSKTKDWTSGQWWEYGFVRRLELPENADWRKMEAWLCNEAILEIKIPKYDTNQGVEEAQNTEAM 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39569961 39570697 + Bda009415.1 Bda12g00883 17898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00883 195 Gene3D - 51 188 IPR008978 -
Bda12g00883 195 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 2 182 - -
Bda12g00883 195 SUPERFAMILY HSP20-like chaperones 52 183 IPR008978 -
Bda12g00883 195 Pfam Hsp20/alpha crystallin family 88 183 IPR002068 -
Bda12g00883 195 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 78 195 IPR002068 -
Bda12g00883 195 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 2 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00883 - - - vvi:100243502 266.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00883 Bda-Chr12:39569961 Bda01g02057 Bda-Chr1:56822013 1.91E-11 dispersed
Bda12g00883 Bda-Chr12:39569961 Bda14g00276 Bda-Chr14:1859727 1.03E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g415 . . . . Bpe09g00198 . . Bma13g01023 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1135 . . . . . . . Bda12g00883 . . . . . . . . . . Car16g00857 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012436 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00883 Bda_Chr12 FPKM 9.59311 10.233973 9.062942 11.380284 29.25123 27.218184 30.537022 9.900026 11.16191