Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00885 ATGCCAACCTCATCGTCCGTCGGCGCTTTCTCCGACAAGGACTCAGAACCCTTCGTCGAAATCGACCCGACCGGACGTTACGGCCGCTACGGCGAGCTTCTCGGATCCGGGTCGGTGAAAAAGGTCTACAGAGCCTTCGATCAAGAAGAAGGAATAGAAGTAGCGTGGAACAAAGTGAAGCTCAGAAGCTTCAATGGCGATTCGGCGATGATAGAACGAGTCTTCTCCGAAGTAAGGCTGCTCAGAAACTTAAGGAACAAAAACATAATCTCTCTCCACCATGTTTGGAGAGACAACGAGAAGGAGAGTTTGAATTTCATTACAGAGGTCTGCACCAGTGGGAACTTGAGAGAATATCGGAAGAAGCACCGGAACGTCGCCATGAAAGCTCTGAAGAAATGGTCGAAGCAGATACTGAAAGGGTTGGATTATTTGCATACTCATCAGCCATGTGTTATTCACAGAGATCTTAACTGCAGTAATCTCTTCGTAAATGGCAATATTGGCCAGGTATTCCTCCATGGAATAATAACATCATTCTTTTTGGGTACAAGGAAGAACAAAACACTTTTTAACTTAAATATCATTAAAATTGGAGACCTGGGTTTGGCAGCCACAGTAGGGGAGAGCCATTTAGCTCATTCAATTTTAGGAACGCCCGAATTCATGGCGCCGGAGCTTTACGAGGAAGACTACACGGAAATGGTGGACATTTACTCCTTTGGAATGTGTTTACTCGAGATGGTGACATTAGAAATACCATATAGCGAGTGTGACAATATTGCTAAAATATACCGAAAAGTGTCCTCCGGAATAAGGCCTCTTGCTCTCAACAAGGTCAAGGACCCTCACTTCAAGTCGTTCATTGAGAAGTGCCTCGCTCAGCCTCGGTCTCGGCCGTCTGCCTCTGACCTTCTACGAGACTCATTCTTTGACGAAATAAAAGACGACGAAGATGATAATGACGATAATGATCATAATTATTTAGATTAG 993 44.81 MPTSSSVGAFSDKDSEPFVEIDPTGRYGRYGELLGSGSVKKVYRAFDQEEGIEVAWNKVKLRSFNGDSAMIERVFSEVRLLRNLRNKNIISLHHVWRDNEKESLNFITEVCTSGNLREYRKKHRNVAMKALKKWSKQILKGLDYLHTHQPCVIHRDLNCSNLFVNGNIGQVFLHGIITSFFLGTRKNKTLFNLNIIKIGDLGLAATVGESHLAHSILGTPEFMAPELYEEDYTEMVDIYSFGMCLLEMVTLEIPYSECDNIAKIYRKVSSGIRPLALNKVKDPHFKSFIEKCLAQPRSRPSASDLLRDSFFDEIKDDEDDNDDNDHNYLD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39587831 39589438 + Bda009418.1 Bda12g00885 17900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00885 330 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 174 - -
Bda12g00885 330 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
Bda12g00885 330 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 192 327 - -
Bda12g00885 330 Gene3D Transferase(Phosphotransferase) domain 1 111 317 - -
Bda12g00885 330 ProSiteProfiles Protein kinase domain profile. 28 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00885 330 Pfam Protein kinase domain 32 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda12g00885 330 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 192 327 - -
Bda12g00885 330 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Bda12g00885 330 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 11 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00885 Bda-Chr12:39587831 Bda12g00949 Bda-Chr12:40578890 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69975 PF00069 Pkinase 3.30E-48 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00885 K08867 - jre:108994268 470.7