Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00887 ATGACGATATTCTCCCCTCCACCAATTCCCATTTTCCCTAAACCGGTCGAAGATGCTCATTTCCCGAGAAAACAACCTCTTTGCAATTTTCTCACCTTCCAAACACCCTTTCGCTTTCCCATATCTCACTCCCCCGTCCTTCCCTTACCACCCGTTTGTCTCCCGAGAAAATCATCGGCTGACGCTCCAGGTGAGATGGTTTCGCCGGAAAACACCAATTGGCTCTTTGATTACGGATTGATCGACGATATTCCGGTCCCCGATTCTACTTTCCCTGTCGCGAATTCCGGTTTCTCTTGGCCCGTCACGGCTGTCAATGGCTCCTCCAGTGTCAGTTTGGAAATTGATGGATCAATGGGAGAACAAGATGAACTGAAGGAATCTGGCTCAAAAAAGAGAGTTAGAACTGAATCCAATTGTGCAACTAGCTCCAAGGCATGTAGGGAGAAGTTGCGCAGGGACAGGCTGAACGACAAGTTTCTGGAATTGGGTGCTATATTGGAGCCTGGAAGACCACCCAAAACAGATAAGGCTGCTATATTGAACGATGCCATCCGAATGGTAACCCAAATGAGGACCGAAGCCCAGAAGCTGAAAGACTCAAATTCAAGTCTGCAGGAAAAGATCAAAGAGCTGAAGGTCGAGAAAAATGAGCTTCGTGATGAGAAACAGAGGTTAAAGGGAGAGAAGGAGAAGCTGGAGCAACAAATGAAATCCTTGAATACAACCCCAAGTTTCTTGTCTTCCCCTCCTGCAATTCCAGCTGCATTTGCTGCTCCTAGCCAAGTTCCAGGAAATAAGTTGGTGCCATTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCAACTTCAGTCGACACATCACAGGATCACGTCCTTCGACCTCCGGTCGCTTAA 906 48.01 MTIFSPPPIPIFPKPVEDAHFPRKQPLCNFLTFQTPFRFPISHSPVLPLPPVCLPRKSSADAPGEMVSPENTNWLFDYGLIDDIPVPDSTFPVANSGFSWPVTAVNGSSSVSLEIDGSMGEQDELKESGSKKRVRTESNCATSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILNDAIRMVTQMRTEAQKLKDSNSSLQEKIKELKVEKNELRDEKQRLKGEKEKLEQQMKSLNTTPSFLSSPPAIPAAFAAPSQVPGNKLVPFISYPGVAMWQFMPPTSVDTSQDHVLRPPVA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39604560 39606495 + Bda009420.1 Bda12g00887 17902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00887 301 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Bda12g00887 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 191 IPR011598 GO:0046983
Bda12g00887 301 SMART finulus 146 197 IPR011598 GO:0046983
Bda12g00887 301 PANTHER BHLH TRANSCRIPTION FACTOR 66 301 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bda12g00887 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 216 IPR036638 GO:0046983
Bda12g00887 301 PANTHER TRANSCRIPTION FACTOR ILR3 66 301 - -
Bda12g00887 301 Gene3D - 143 220 IPR036638 GO:0046983
Bda12g00887 301 CDD bHLH_AtILR3_like 145 220 - -
Bda12g00887 301 Coils Coil 181 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00338 Bda12g00887 CCT
Bda07g00338 Bda12g00887 ECH
Bda05g00737 Bda12g00887 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00887 Bda-Chr12:39604560 Bda07g00099 Bda-Chr7:1167675 1.41E-07 dispersed
Bda13g00632 Bda-Chr13:7301859 Bda12g00887 Bda-Chr12:39604560 3.75E-65 transposed
Bda06g00968 Bda-Chr6:28070388 Bda12g00887 Bda-Chr12:39604560 5.98E-21 transposed
Bda12g00887 Bda-Chr12:39604560 Bda05g00737 Bda-Chr5:55743085 4.82E-137 wgd
Bda12g00887 Bda-Chr12:39604560 Bda07g00338 Bda-Chr7:4458922 6.76E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16812 PF00010 HLH 3.00E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00887 - - zju:107431674 370.163