Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00891 ATGGAGGGTACAGCTTCTTCATTAAGTGGACTTTACCATGCTCTAACAAAAGATGGCATTATTGACGAATCATTACCAGATCATCGAATTTCAAAAGCTGAAAATGAAAACTTACCACTCATCGATTTAGACAGGCTGAACTCCGACGATCATTCCGATCGATCGGAGTGCATAAACGATATTATTCGAGCTGCTTCCGAGTGGGGTTTCTTTCAAGTAGTGAACCATGGGGTGCCGGAAGAGCTGTTGAGGGCCATGAAATATGAGCAGAAGAAGGCATTTCACGAAGCTAATTGCAGCAAAAATGAAAAAGGGTTTTTCAATTTGAGAGAGTGTTACCGTTTGGGCAATCCAGTTGCTACTTCTCCAAGCCAAATCTCTTGGTCTGATGCTTTTCATATTGCTGTTGAAGAAATTTCAAAGCTGGATCAAAACAAAAGTTTCAGCGTCTCTTTTTTCTCCAGGCCAATAATTGAAGCTGTGGTGACAAAACTGTTCAATTTGGCTAAAAGCTTAGGTGAGATTTTAGGTAAGAATTTGGGTCTAAGTTCTACTTATTTCGATGAAAACTGCCCGATTGGCCAAAGTTATGTCCGTCTCAATCGATATCCGCCATGTTCGGTGGCTTCCGAGGTTTACGGTTTGATTCCTCACACCGACAGTGATTTTCTCACCATTTTATATCAAAATCAAGTTGAGGGACTGCAGTTGTTGAAAGATGGAAAATGGTTTGGAGTTAAACCTAATCCTCAAGCTTTGATCGTTAACATTGGAGACTTATTTCAGGCAATCAGCAACGATGTGTACAAAAGCTTGAAGCACAGAGTAATGGCGGCAGAAGGAGAAGAGAGATTATCGTTTGCATTTTTCTACTGCCCTTCAAGGAAAGCCATTATTGAGAGTTGCTCAAAACCAGGTGTTTATAAGAAGTTCAGTTTTGGAGAATACAGAAACCAAATTGACAAAGATGTTAAAGACACTGGCAACAAAGTGGGCCTCTCTAGATTTCTCTTGTAA 1017 40.41 MEGTASSLSGLYHALTKDGIIDESLPDHRISKAENENLPLIDLDRLNSDDHSDRSECINDIIRAASEWGFFQVVNHGVPEELLRAMKYEQKKAFHEANCSKNEKGFFNLRECYRLGNPVATSPSQISWSDAFHIAVEEISKLDQNKSFSVSFFSRPIIEAVVTKLFNLAKSLGEILGKNLGLSSTYFDENCPIGQSYVRLNRYPPCSVASEVYGLIPHTDSDFLTILYQNQVEGLQLLKDGKWFGVKPNPQALIVNIGDLFQAISNDVYKSLKHRVMAAEGEERLSFAFFYCPSRKAIIESCSKPGVYKKFSFGEYRNQIDKDVKDTGNKVGLSRFLL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39631582 39635945 + Bda009424.1 Bda12g00891 17906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00891 338 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 331 - -
Bda12g00891 338 Pfam 2OG-Fe(II) oxygenase superfamily 198 293 IPR044861 -
Bda12g00891 338 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 138 IPR026992 -
Bda12g00891 338 Gene3D - 18 318 IPR027443 -
Bda12g00891 338 PANTHER 20-OXIDASE, PUTATIVE-RELATED 17 331 - -
Bda12g00891 338 SUPERFAMILY Clavaminate synthase-like 29 320 - -
Bda12g00891 338 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 293 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00891 - - K04125 jre:108983647 358.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00735 Bda12g00891 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01541 Bda-Chr9:47041195 Bda12g00891 Bda-Chr12:39631582 4.43E-45 dispersed
Bda12g00891 Bda-Chr12:39631582 Bda03g00820 Bda-Chr3:6960904 1.07E-44 dispersed
Bda01g00049 Bda-Chr1:8198926 Bda12g00891 Bda-Chr12:39631582 2.58E-24 transposed
Bda14g01090 Bda-Chr14:9665962 Bda12g00891 Bda-Chr12:39631582 3.06E-64 transposed
Bda12g00891 Bda-Chr12:39631582 Bda05g00735 Bda-Chr5:55730172 1.20E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g450 . . . . . . Bma10g00535 Bma13g01030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00735 Bda12g00891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010893 2 1 0 2 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 2 1 1 1 1 0 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00891 Bda_Chr12 FPKM 1447.925781 1603.254028 208.803711 208.131332 140.771683 157.664719 135.015213 32.98098 31.254967