Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00892 ATGCAAATATTCGTGAAAACCCTCACCGGAAAGTCGATAACCCTGGAGGTGGAAAGCTCCGACACCGTCGAGAATGTTAAGACAAAAATCCAGGACAAGGAAGGAATTCCGACGGACCAACAGAGGCTGATTTTCGCCGGAAAACAATTGGAAGACGGCAGAACACTGGCTGATTACAGCGTTCAGAAGGAGTCCACCCTCCATTTAGTGCTTCGTCTTCGGGGAGGAATGCAGATTTTCATCAAAACTCTCACCGGAAAAACTGTTACTTTGGAAGTAGAAAGTTCAGACACCGTTGAAATTGTGAAGACGAAGATCCAAGATAAAGAGGGTATCCCACCAGATCAACAGAGATTGATCTTCGCTGGAAAGCAACTCGAAGATGATCGTACTTTAGCTGATTACAATATTCAGAAGGAGTCGACCATACACTTGGTTCTTCGTCTACGTGGGGGAATGCAAATTTTCGTGAAAACCCTCACCAGAAAGACGATAACTTTGGAGCTCGAAAGCTTCGACACCGTCGCAAACGTCAAGAGGAAGATTGAAGACAAAGAAGGAATTTTTCCGCAACACCAGAGACTGATATTTGCAGGGAAACAACTAGAAGATGATCGAACCCTTGCAGACTACAATATTCAGAAGGAGTCTACTCTCCATCTGGTGCTTCGTCTTCTCGGAGGAATGCAAATTTTCGTCAAAACCCTAACAGGGAAGAGCATTACGCTGGAGGTGGAGAGTTCAGACACCATCGAAAACGTAAAGACAAAGATTCAGGACAAGGAAGGCATCCCGCCGGACCAACAGAGACTGATATTCGCCGGGAAGCAACTGGAAGACAGTCGGACTTTGGCTGACTACAGCATCCAAAAGGAGTCAACTTTGCATTTGGTTCTTCGTTTGCGCGGAGGAATTTAA 918 45.75 MQIFVKTLTGKSITLEVESSDTVENVKTKIQDKEGIPTDQQRLIFAGKQLEDGRTLADYSVQKESTLHLVLRLRGGMQIFIKTLTGKTVTLEVESSDTVEIVKTKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTIHLVLRLRGGMQIFVKTLTRKTITLELESFDTVANVKRKIEDKEGIFPQHQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLLGGMQIFVKTLTGKSITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDSRTLADYSIQKESTLHLVLRLRGGI 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39674882 39675799 + Bda009426.1 Bda12g00892 17907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00892 305 PRINTS Ubiquitin signature 281 302 IPR019956 -
Bda12g00892 305 PRINTS Ubiquitin signature 239 259 IPR019956 -
Bda12g00892 305 PRINTS Ubiquitin signature 260 280 IPR019956 -
Bda12g00892 305 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Bda12g00892 305 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bda12g00892 305 PANTHER UBIQUITIN 13 227 305 - -
Bda12g00892 305 PANTHER UBIQUITIN 13 75 280 - -
Bda12g00892 305 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Bda12g00892 305 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Bda12g00892 305 Gene3D - 77 152 - -
Bda12g00892 305 Gene3D - 229 305 - -
Bda12g00892 305 Gene3D - 153 228 - -
Bda12g00892 305 Gene3D - 1 76 - -
Bda12g00892 305 PANTHER UBIQUITIN 13 1 188 - -
Bda12g00892 305 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Bda12g00892 305 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bda12g00892 305 PANTHER UBIQUITIN 227 305 - -
Bda12g00892 305 PANTHER UBIQUITIN 75 280 - -
Bda12g00892 305 PANTHER UBIQUITIN 1 188 - -
Bda12g00892 305 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Bda12g00892 305 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Bda12g00892 305 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Bda12g00892 305 CDD Ubl_ubiquitin 229 304 - -
Bda12g00892 305 Pfam Ubiquitin family 155 225 IPR000626 GO:0005515
Bda12g00892 305 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Bda12g00892 305 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bda12g00892 305 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Bda12g00892 305 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Bda12g00892 305 SMART ubq_7 1 72 IPR000626 GO:0005515
Bda12g00892 305 SMART ubq_7 153 224 IPR000626 GO:0005515
Bda12g00892 305 SMART ubq_7 229 300 IPR000626 GO:0005515
Bda12g00892 305 SMART ubq_7 77 148 IPR000626 GO:0005515
Bda12g00892 305 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00892 - - K08770 ppp:112295957 537.724
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00342 Bda12g00892 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00766 Bda-Chr10:42090949 Bda12g00892 Bda-Chr12:39674882 8.18E-06 dispersed
Bda12g00892 Bda-Chr12:39674882 Bda14g01091 Bda-Chr14:9700189 0 dispersed
Bda14g00644 Bda-Chr14:4830071 Bda12g00892 Bda-Chr12:39674882 7.34E-06 dispersed
Bda08g00102 Bda-Chr8:890392 Bda12g00892 Bda-Chr12:39674882 3.88E-07 transposed
Bda13g00409 Bda-Chr13:5022579 Bda12g00892 Bda-Chr12:39674882 1.47E-11 transposed
Bda12g00892 Bda-Chr12:39674882 Bda07g00342 Bda-Chr7:4475844 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g452 . Blo03g01438 Bda07g00342 . Bpe09g00191 . . Bma13g01031 Cmo16g00914 . Cma01g01148 Cma09g00931 . . . . . Bhi09g01937 . . . . Mch11g1159 . Cla10g00532 Cam10g0530 Cec10g0548 Cco10g0537 Clacu10g0553 Cmu10g1378 Cre10g0781 . . . . . Csa03g00539 Chy04g00990 Cme06g02295 . Blo10g00807 . Bda12g00892 . . . Bma14g00353 Sed14g1362 Cmo01g01200 Cmo09g00928 . . . . . . Bhi11g00652 Tan01g1675 Cmetu04g0112 . Hepe07g1169 Mch10g1199 . Cla05g01530 Cam05g1639 Cec05g1643 Cco05g1676 Clacu05g1630 Cmu05g1526 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000061 12 9 9 13 10 12 1 13 13 6 9 12 13 5 12 15 12 6 1 12 9 11 13 12 3 0 11 14 12 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00892 Bda_Chr12 FPKM 0.480447 1.952991 1.946479 2.355649 18.312105 14.932686 19.457384 0.0 0.112694