Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda12g00894 | CTTCTAATTCTAATTTGTGGCGAGATAGATCCTTTTGCTGATGCAAATGCTGAGGACTCTGGTGCTGGGGCAAAAGAGTATGTGCATATTCGAATTCAACAGCGGAATGGTAGGAAGAGTCTTACAACTGTGCAGGGACTGAAGAAAGAATTCAGCTACAACAAGATATTGAAGGACCTCAAGAAGGAGTTTTGCTGCAATGGTACAGTTGTTCAGGATCCAGAGCTAGGCCAGGTTATCCAACTTCAAGGCGACCAACGGAAAAATGTCTCTACATTCCTCGTCGAGGCTAGTATTGTGAAGAAGGACAATATCAAGATTCATGGTTTCTGA | 333 | 43.24 | LLILICGEIDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVEASIVKKDNIKIHGF | 110 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 39679941 | 39680840 | + | Bda009428.1 | Bda12g00894 | 17909 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda12g00894 | 110 | CDD | eIF1_SUI1 | 26 | 109 | IPR005874 | GO:0003743 | |
| Bda12g00894 | 110 | Gene3D | - | 3 | 110 | - | - | |
| Bda12g00894 | 110 | TIGRFAM | SUI1_MOF2: translation initiation factor SUI1 | 8 | 110 | IPR005874 | GO:0003743 | |
| Bda12g00894 | 110 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 7 | 110 | - | - | |
| Bda12g00894 | 110 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 7 | 110 | - | - | |
| Bda12g00894 | 110 | Pfam | Translation initiation factor SUI1 | 25 | 97 | IPR001950 | GO:0003743|GO:0006413 | |
| Bda12g00894 | 110 | SUPERFAMILY | eIF1-like | 10 | 110 | IPR036877 | GO:0003743|GO:0006413 | |
| Bda12g00894 | 110 | PIRSF | Transl_init_SUI1_Euk | 2 | 110 | IPR005874 | GO:0003743 | |
| Bda12g00894 | 110 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 28 | 98 | IPR001950 | GO:0003743|GO:0006413 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda09g00387 | Bda12g00894 | CCT | |
| Bda09g00387 | Bda12g00894 | ECH | |
| Bda05g00734 | Bda12g00894 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00402 | Bda-Chr9:5042126 | Bda12g00894 | Bda-Chr12:39679941 | 3.02E-54 | dispersed | |
| Bda12g00894 | Bda-Chr12:39679941 | Bda05g00734 | Bda-Chr5:55711810 | 2.71E-70 | wgd | |
| Bda12g00894 | Bda-Chr12:39679941 | Bda09g00387 | Bda-Chr9:4936926 | 1.48E-69 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda12g00894 | K03113 | - | csv:101219651 | 200.675 |