Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00896 ACCGTCACTCGCTTTCTTTTTCCCCCCTATCCCTCTCTAACTTACAGAATGAGGTGTTCTTTTAAACTATCGATATTACTTCTTTTGTTCATTCTTTCACTAATCGACGTCAGTTTCGGACAAGATTACGACGACGATGAGGTGGCGGCCCCTCCGCCGGAGCAAGAAGACTGCAACGGGATTTTCTTGTCCTACACGTTCATTTCCCGGCAGAAAGAGTATCCTCATGTGAAGAACGCGACGGCCCAGTCGTGGGCGTTCAAGTCTCAAGTTAGGATTTTGAACGCCGGCTCGACGGAGCTGAAGGCTTGGAAGGTCTTCATCGGCTTTCAACACCAAGAAATATTAGTGTCTGCCAGCGGCGCCGTCGTGGTCGATGGCACTGATTTTCCTGCCGCTGTAGGTAACGGGACGACATTGGCTGGATACCCAATGGCCGACTTGGAAACTGCCATTGATACCGCCGGAGATATAAATCAGATTCAGGCTCTAATTCAGCTGGTCGGAACGCAATTCGGCGTCAAACCATCCGGCACTCCGATGCCAAAGACCATCCGACTCGTTCATGACGGTTTTAAGTGCCCGGCATCTCATCTTCGCGGGAAGAACACGATGCATGTATGCTGCAAAAAGGATCCGAAAGTGAAGTTGAAAGATAAGAAGACGAAGTTTTTGCCGAGGCAAAACGGCGATCTTTCACTAACATATGATGTGCTTCAAGCCTACGGAAACAACTACCTCGCACAAGTCACGATCGACAACAACCACCCTCTTGGCCGCCTCGATCACTGGAACTTGACATGGGAGTGGATGAGAGGAGAGTTCATTCAAACCATGAGAGGAGCCTACACCCACAAAAGAGACTATTCAGAGTGTATTTACGGCACCGCCGGCCAATACTACGCCGATTTCGACTTCTCTCAGGTGATGAACTGCGAAAAGCGGCCCGTAATTGCTGATCTTCCTGCCGACCGAGCAAACGACGAAAAAGTGGGGAAGTTGCCTTATTGCTGCCGGAACGGTAGCCTCTTGCCTTCCGTGATGGACGCGAGTAAATCAAGGTCTATTTTCCAATTACAAGTCTTTAAGATGCCTCCAGATCTGAACCGAACTGCGCTCACCCCTCCACAAAAATGGAAGATCAACGGCGTTCTGAACCCAAATTACAAATGCGGGCCCCCAATTCGGGTTGAGCCGACGGAGTTTCCCGACCCCAGTGGCCTTCAATCCACGAGCACCGCCATTGCTAGTTGGCAAGTCGTCTGCAATATTACACGGCCGAAACTCAAACAATCTCGGTGTTGTGTCTCGTTTTCGGCTTACTATAACGACTCGGTTATTCCGTGCAATACTTGCGCTTGCGGCTGTGCCGACCAAAGCGACACCTGCGATGCCGATGCTGATCCAATGCTTCTTCCAGCTGAGGCTCTTCTTGTTCCATTTGATAACAGAACAGCAAAGGCAAAAGCTTGGGCTAAGATCAAACACTCTCCAATCCCGAAGACATTGCCGTGTCCAGACAATTGCGGCGTTAGCATCAACTGGCACATAAATTCCGATTATAGCAACGGATGGACGGCTCGGGTGACGCTCTTCAACTGGGAAGATTACCCGTTCGAGGACTGGTTTACCGCAATTCAGATGAAGAAAGCCGGCAAAGGTTATGAAAATGTCTACTCCTTCAATGGAACTAAACTTACTAATCTCAACAACACCATTTTCTTCCAAGGTCTACCTGGTTTGAACTATCTAGTGGGCGAAACAAACGGGTCGAATCCGAAAACCGATCCTCGAGTTCCCGGAAAGCAGCAATCGGTGATTTCATTCACGAAGAAGAACCTTCACGACCTCAATATTCGACTCGGCGACGGGTTCCCTTCGAAGCTGTTCTTCAACGGCGAAGAATGCGCTCTTCCGACCGAAATTCCGTTGGCAAGCTCGGCATATCGGTTCAATACCGGATTTACTTGGATCTTTCTCGTTTTGATCTTTACTTTCGGGTTTATGGCAGAACAACTCCATTGA 2025 49.28 TVTRFLFPPYPSLTYRMRCSFKLSILLLLFILSLIDVSFGQDYDDDEVAAPPPEQEDCNGIFLSYTFISRQKEYPHVKNATAQSWAFKSQVRILNAGSTELKAWKVFIGFQHQEILVSASGAVVVDGTDFPAAVGNGTTLAGYPMADLETAIDTAGDINQIQALIQLVGTQFGVKPSGTPMPKTIRLVHDGFKCPASHLRGKNTMHVCCKKDPKVKLKDKKTKFLPRQNGDLSLTYDVLQAYGNNYLAQVTIDNNHPLGRLDHWNLTWEWMRGEFIQTMRGAYTHKRDYSECIYGTAGQYYADFDFSQVMNCEKRPVIADLPADRANDEKVGKLPYCCRNGSLLPSVMDASKSRSIFQLQVFKMPPDLNRTALTPPQKWKINGVLNPNYKCGPPIRVEPTEFPDPSGLQSTSTAIASWQVVCNITRPKLKQSRCCVSFSAYYNDSVIPCNTCACGCADQSDTCDADADPMLLPAEALLVPFDNRTAKAKAWAKIKHSPIPKTLPCPDNCGVSINWHINSDYSNGWTARVTLFNWEDYPFEDWFTAIQMKKAGKGYENVYSFNGTKLTNLNNTIFFQGLPGLNYLVGETNGSNPKTDPRVPGKQQSVISFTKKNLHDLNIRLGDGFPSKLFFNGEECALPTEIPLASSAYRFNTGFTWIFLVLIFTFGFMAEQLH 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39694223 39696329 + Bda009430.1 Bda12g00896 17911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00896 674 PANTHER COBRA-LIKE PROTEIN 10 22 672 - -
Bda12g00896 674 PANTHER COBRA-LIKE PROTEIN 7 22 672 - -
Bda12g00896 674 Pfam COBRA-like protein 246 425 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00896 - - - csv:101216608 1038.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01159 Bda-Chr3:12772776 Bda12g00896 Bda-Chr12:39694223 0 dispersed
Bda12g00896 Bda-Chr12:39694223 Bda15g00877 Bda-Chr15:14326156 3.58E-31 dispersed
Bda12g00896 Bda-Chr12:39694223 Bda08g00305 Bda-Chr8:3180030 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g458 . . . . Bpe09g00187 Bpe08g01136 . Bma13g01035 Cmo16g00909 Cmo04g01012 . . . . Sed07g1929 . . Bhi09g01934 Tan01g4517 Cmetu06g0182 . Hepe01g1303 . . Cla10g00527 Cam10g0521 Cec10g0538 Cco10g0528 Clacu10g0543 Cmu10g1369 Cre10g0772 Cone6ag0084 . Cone14ag1126 . Lsi04g01234 Csa03g00533 . Cme06g02279 . Blo10g00811 . Bda12g00896 . . Bma07g01310 . . . . Cma04g00942 Cma16g00850 Car04g00880 Car16g00854 . Cpe01g00854 . . . . . . . Cla05g01523 Cam05g1636 Cec05g1640 Cco05g1673 Clacu05g1626 Cmu05g1523 . Lsi05g00621 . Chy06g01797 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00513 . 21 410 COBRA Gene Family AT5G60920 82.0 2.1e-209 724.9
Bda07g01033 . 14 407 COBRA Gene Family AT5G60920 76.6 2.9e-198 688.0
Bda12g00205 . 37 434 COBRA Gene Family AT5G60920 67.2 1.8e-176 615.5
Bda12g00203 . 48 327 COBRA Gene Family AT5G60920 74.6 2.6e-138 488.8
Bda15g00631 BCT 267 499 COBRA Gene Family AT5G60920 61.3 3.8e-89 325.5
Bda06g00512 BCT,CCT 43 219 COBRA Gene Family AT5G60920 67.2 1.5e-74 276.9
Bda06g00513 . 7 422 COBRA Gene Family AT3G02210 74.9 6.2e-202 700.3
Bda07g01033 . 1 417 COBRA Gene Family AT3G02210 73.3 1.1e-198 689.5
Bda12g00205 . 2 433 COBRA Gene Family AT3G02210 62.8 1.7e-175 612.5
Bda12g00203 . 11 327 COBRA Gene Family AT3G02210 73.1 4.1e-145 511.5
Bda15g00631 BCT 256 484 COBRA Gene Family AT3G02210 59.8 4.0e-84 308.9
Bda06g00512 BCT,CCT 15 219 COBRA Gene Family AT3G02210 61.5 3.4e-75 279.3
Bda07g01033 . 1 416 COBRA Gene Family AT3G29810 75.4 1.7e-199 692.2
Bda06g00513 . 4 408 COBRA Gene Family AT3G29810 74.9 3.2e-195 677.9
Bda12g00205 . 18 416 COBRA Gene Family AT3G29810 66.2 9.1e-174 606.7
Bda12g00203 . 30 327 COBRA Gene Family AT3G29810 72.9 8.6e-140 493.8
Bda15g00631 BCT 267 480 COBRA Gene Family AT3G29810 63.9 1.0e-84 310.8
Bda06g00512 BCT,CCT 13 219 COBRA Gene Family AT3G29810 61.1 2.1e-77 286.6
Bda12g00205 . 23 345 COBRA Gene Family AT5G15630 85.1 2.8e-178 621.3
Bda06g00513 . 7 331 COBRA Gene Family AT5G15630 72.8 3.9e-148 521.2
Bda07g01033 . 2 325 COBRA Gene Family AT5G15630 68.3 2.2e-143 505.4
Bda12g00203 . 31 327 COBRA Gene Family AT5G15630 68.1 2.0e-128 455.7
Bda06g00512 BCT,CCT 28 219 COBRA Gene Family AT5G15630 68.2 5.4e-81 298.1
Bda15g00631 BCT 267 408 COBRA Gene Family AT5G15630 81.8 3.0e-71 265.8
Bda06g00513 . 17 197 COBRA Gene Family AT5G60950 59.1 7.5e-62 233.8
Bda07g01033 . 4 190 COBRA Gene Family AT5G60950 56.9 1.3e-61 233.0
Bda12g00203 . 19 224 COBRA Gene Family AT5G60950 53.9 3.7e-61 231.5
Bda06g00512 BCT,CCT 1 219 COBRA Gene Family AT5G60950 53.0 9.1e-60 226.9
Bda12g00205 . 15 213 COBRA Gene Family AT5G60950 54.0 1.2e-56 216.5
Bda07g01033 . 1 395 COBRA Gene Family AT1G09790 54.4 1.0e-132 470.3
Bda06g00513 . 5 402 COBRA Gene Family AT1G09790 53.6 6.6e-132 467.6
Bda12g00205 . 25 416 COBRA Gene Family AT1G09790 52.4 2.4e-129 459.1
Bda12g00203 . 32 327 COBRA Gene Family AT1G09790 51.0 5.3e-89 325.1
Bda15g00631 BCT 268 479 COBRA Gene Family AT1G09790 57.5 1.3e-74 277.3
Bda08g00305 BCT 31 628 COBRA Gene Family AT4G16120 67.3 1.1e-255 879.4
Bda03g01159 BCT 33 626 COBRA Gene Family AT4G16120 64.3 1.5e-244 842.4
Bda12g00896 . 54 650 COBRA Gene Family AT4G16120 56.1 2.5e-212 735.3
Bda08g00305 BCT 9 647 COBRA Gene Family AT3G16860 62.0 4.1e-239 824.3
Bda03g01159 BCT 11 639 COBRA Gene Family AT3G16860 60.6 2.0e-233 805.4
Bda12g00896 . 51 664 COBRA Gene Family AT3G16860 52.8 1.2e-201 699.9
Bda08g00305 BCT 24 647 COBRA Gene Family AT5G49270 60.6 5.1e-237 817.4
Bda03g01159 BCT 1 625 COBRA Gene Family AT5G49270 58.2 6.3e-227 783.9
Bda12g00896 . 50 669 COBRA Gene Family AT5G49270 52.3 3.1e-202 701.8
Bda12g00896 . 22 650 COBRA Gene Family AT3G20580 64.6 2.0e-257 885.2
Bda08g00305 BCT 27 628 COBRA Gene Family AT3G20580 54.8 2.0e-204 709.1
Bda03g01159 BCT 29 626 COBRA Gene Family AT3G20580 53.0 5.2e-197 684.5
Bda12g00896 . 25 673 COBRA Gene Family AT4G27110 60.6 3.8e-240 827.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00896 Bda_Chr12 FPKM 0.994084 0.0 1.574964 1.921994 0.0 0.0 0.0 1.275776 0.0