Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00897 ATGTGGTGGGACGCTGGAGCTCCTGCTGATTCTTTCTATGAGGTCCGTCCGGAATGCACTGATGTTCCGAAAACCCGCTTCAAGATCAAGGCAGGGAAGACTTTAAGTGTAAGGAAATGGCACGCTGCATTTTCTTCAGAAGGATATCTGGATATAGGAAAGACTCTAAGTCGCATCCAACGAGGGGGGATTCATCCTTCGATTAGAGGAGAAGTGTGGGAGTTTCTCCTCGGCTGTTACGATCCCAATAGCACATTCGATGAAAGAGAGCAGCTGCGGCAGCTTCGGAGGCAGCAATATGCTCGATGGAAGGAAGACTGCCGCCAAATGTTTCCTGTTGTGGGAAGCGGTAGATTCATCACAGCCCCAGTAATAACAGAGGAAGGCCATCCCATTAAAGATCCAATAGTACTTAAGGAAACAAATCTAGGCAAGGTTTTCCCTTTACCATCTGAAAGTAATGGCGAGGCTGATGATAATCTTCGGGATGGTTCAAATTCAAAAGCTTCCAATGATATGCAGATTGTAAAGGACAAAAAAGTTATTCAGTGGATGCTTACTCTGCATCAAATAGGTCTTGATGTGGTTCGCACCGACAGAACATTGATGTTTTATGAAAAGCAAGAGCATTTGTCGAAACTTTGGGATATTCTAGCTGTATATGCCTGGATCGATAAAGATGTGGGTTATTGTCAAGCAGGAATGAGCGATCTTTGTTCTCCGATGATTATTCTTCTAGAAGACGAAGCTGATGCATTTTGGTGCTTTGAACGTTTGATGAGAAGACTGCGAGGAAATTTCAGATGCACAGATAGTTCTGTTGGCGTGGAGGCACAGCTCAGTAATTTGGCTGCAATTACTGAAGTTATCGACCCGAAGCTTCATCAACACTTAGAGACTCTCGGTGGGGGCGACTATTTATTTGCTTTTAGGATGCTCATGGTTATGTTTCGTCGAGAATTTTCTTTTTGTGATTCCCTCTATCTTTGGGAGATGATGTGGGCCCTGGAATACGAGCCAGACCTGTTCTTGATATACGAAGTTTCGAATTTGGCAAGTGAAAAGTTGGAAGGATCGAAAGAAAGAGCGAGGTCGATTCGACATTACGGGAAGTACGAGAGAGAGAATATGAAGGCCAAAAGTTCGGAAGCTCCCCTCCCTATCTCAGTTTTTCTAGTTGCAAGCGTGTTGAAAGATAAGAGCTCTAAGCTGCTTCACGAGGCTCGAGGTTTGGACGATGTTGTTAAGATATTAAATGACATAACTGGAAATTTAGATGCTAAGAAAGCTTGCACTGGAGCAATGAAACTCCACAGGAAGTATCTAAAAAAGGTAATGCTGTGTCTAGAGAGAGAGACAGAGAGAAGAGAGATCTTGAACTCAAATTTGATCGTTATTGTTACTGCTACTACAGGCAAAACAGACATAGTAACCCGAGGAAAAGGATGCTAG 1452 43.53 MWWDAGAPADSFYEVRPECTDVPKTRFKIKAGKTLSVRKWHAAFSSEGYLDIGKTLSRIQRGGIHPSIRGEVWEFLLGCYDPNSTFDEREQLRQLRRQQYARWKEDCRQMFPVVGSGRFITAPVITEEGHPIKDPIVLKETNLGKVFPLPSESNGEADDNLRDGSNSKASNDMQIVKDKKVIQWMLTLHQIGLDVVRTDRTLMFYEKQEHLSKLWDILAVYAWIDKDVGYCQAGMSDLCSPMIILLEDEADAFWCFERLMRRLRGNFRCTDSSVGVEAQLSNLAAITEVIDPKLHQHLETLGGGDYLFAFRMLMVMFRREFSFCDSLYLWEMMWALEYEPDLFLIYEVSNLASEKLEGSKERARSIRHYGKYERENMKAKSSEAPLPISVFLVASVLKDKSSKLLHEARGLDDVVKILNDITGNLDAKKACTGAMKLHRKYLKKVMLCLERETERREILNSNLIVIVTATTGKTDIVTRGKGC 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39697672 39702443 - Bda009431.1 Bda12g00897 17912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00897 483 Gene3D - 273 451 - -
Bda12g00897 483 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 297 IPR035969 -
Bda12g00897 483 MobiDBLite consensus disorder prediction 148 169 - -
Bda12g00897 483 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 164 267 - -
Bda12g00897 483 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 275 441 IPR035969 -
Bda12g00897 483 Pfam Rab-GTPase-TBC domain 167 338 IPR000195 -
Bda12g00897 483 SMART tbc_4 60 360 IPR000195 -
Bda12g00897 483 PANTHER - 3 444 - -
Bda12g00897 483 ProSiteProfiles TBC/rab GAP domain profile. 63 337 IPR000195 -
Bda12g00897 483 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00897 - - - mnt:21395123 736.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00732 Bda12g00897 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00645 Bda-Chr4:55216363 Bda12g00897 Bda-Chr12:39697672 0 dispersed
Bda08g00038 Bda-Chr8:303037 Bda12g00897 Bda-Chr12:39697672 6.51E-17 dispersed
Bda12g00897 Bda-Chr12:39697672 Bda13g00248 Bda-Chr13:3130371 5.50E-12 dispersed
Bda12g00897 Bda-Chr12:39697672 Bda05g00732 Bda-Chr5:55703317 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00897 Bda_Chr12 FPKM 70.193375 84.21344 65.143555 68.026123 26.535557 20.699957 30.024445 56.964294 54.049107