Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00902 ATGATCCAATGGATGAAGCGATTGGGAGCTTCATTTGGGGTTTCGTTTCTTTGGCTTATTTGCTTGATTTACTTCACCCAGGGATTTAGATCCTTTGTATGGACTGCAGTTTCATATCAGCTCAAAGACAAGCTTAGGCTGTCACCCTCAGAATCACAGTTTGTGTTTTCTGTTACATTTTTCCCTTGGAATATAAAGCCACTCTATGGAATTTTCTCTGATTGTATTCCAATCAGAGGGAGAAAAAGGATTCCATACTTGGTGATCGCAACTTTGCTTTGTCTAGTGCCATGGCTTTTTCTAAGCCTAAACTCAATTTTAAGTTCCAGATGGTATCTTATGATCTTATTGACACTGCAAAATGTGGGTTCAGCTATGGCTGATGTGGTGATTGATGCCATGATTGCTGAGGCCGTGAGATTGGAGCAGTCTTCATTTGCTGGAGATCTGCAGTCAATATCTTGGTTGGCAATGGCTTTTGGTGGCATAAGTGGAAGTTTATTCAGTGGATTTGCATTAACCAAGTTCGAGATAAACAGGATTTTTCTTATTTTTACTATACTACCGACCATGCAGTTATTATCGTGTGGTATGGTCGATGAAAAGCCTGTAAACAGCAGAATGAATTTGAAGATTTCTCATACGATAAGTTTCTCGGAGGTCAATGGTGGTAGTAACAATCTAGACGATAATAGTTTTTCAAGAAGAAAATCCAAAAGTACCTCAAGAGGAAAGAAGGGACAAAAGAACAAAAAGAAAACATTTATTACTGATAAATCACAGCAAGCTGATATGTCTTTGGTATTGCAGTGGTTTCATTCTCTAAAATCAGCCTCTTACAGTTTGATCCGTGCTTTTACTAAACCAATGATTTTAAGACCAATGACATGGTTTTTCCTTGCACATGTAACTGTTCCAAATCTATCCACGGCCATGTTCTACTACCAAACAGAGGTCTTGCATTTAGAAGCCTCGTTTCTCGGGACTGCGCGAGTCGTTGGATGGTTGGGTCTAATGTTTGGAACTTTCATTTATAATCGTTGCTTTAAGACTGTGAAGCTAAGAAGAATACTCATGTGGGCTCAAATTGGTTTATCTCTTCTGAGTCTCCTTGATGTTGTTTTGGTTTCTCGCTTGAATGTTGACATCGGGCTTTCTGATAGAACGATGGTGCTCTTCAGTTCAGCTCTTGCGGATGCGATCAATCAACTCAAGTTTATGCCATTTCTGATCTTATCAGGGCAGCTCTGTCCACCCGGAATCGAAGGAACTCTCTTCGCGCTTTTCATGTCAATTAACAACTTAGGCTCGACAATTGGATCGTTCGTGGGTGCTGGCCTTGCATCAGCCCTGAACATCTCTTCGGCTTCTTTCGACAAACTTCTTACCGGAATCTCCATTCAAGTAATCTGCTCTTTCATTCCTGTGGCCTTCCTCTTTTTAATACCAAAGGAAGCCACTGGTGTATCAGCATAG 1476 40.65 MIQWMKRLGASFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLRLSPSESQFVFSVTFFPWNIKPLYGIFSDCIPIRGRKRIPYLVIATLLCLVPWLFLSLNSILSSRWYLMILLTLQNVGSAMADVVIDAMIAEAVRLEQSSFAGDLQSISWLAMAFGGISGSLFSGFALTKFEINRIFLIFTILPTMQLLSCGMVDEKPVNSRMNLKISHTISFSEVNGGSNNLDDNSFSRRKSKSTSRGKKGQKNKKKTFITDKSQQADMSLVLQWFHSLKSASYSLIRAFTKPMILRPMTWFFLAHVTVPNLSTAMFYYQTEVLHLEASFLGTARVVGWLGLMFGTFIYNRCFKTVKLRRILMWAQIGLSLLSLLDVVLVSRLNVDIGLSDRTMVLFSSALADAINQLKFMPFLILSGQLCPPGIEGTLFALFMSINNLGSTIGSFVGAGLASALNISSASFDKLLTGISIQVICSFIPVAFLFLIPKEATGVSA 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39758743 39763648 + Bda009437.1 Bda12g00902 17917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00902 491 CDD MFS_FBT 18 480 - -
Bda12g00902 491 MobiDBLite consensus disorder prediction 227 255 - -
Bda12g00902 491 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 1 490 IPR039309 -
Bda12g00902 491 SUPERFAMILY MFS general substrate transporter 17 486 IPR036259 -
Bda12g00902 491 TIGRFAM fbt: folate/biopterin transporter 19 484 IPR004324 GO:0016021
Bda12g00902 491 Pfam BT1 family 27 485 IPR039309 -
Bda12g00902 491 Gene3D MFS general substrate transporter like domains 15 482 IPR036259 -
Bda12g00902 491 PANTHER FOLATE-BIOPTERIN TRANSPORTER 4-RELATED 1 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00902 - - - pvy:116118284 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00239 Bda-Chr8:2380207 Bda12g00902 Bda-Chr12:39758743 1.68E-64 dispersed
Bda11g00652 Bda-Chr11:6453724 Bda12g00902 Bda-Chr12:39758743 2.35E-58 dispersed
Bda12g00556 Bda-Chr12:9250462 Bda12g00902 Bda-Chr12:39758743 8.49E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g484 . . . . Bpe09g00181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00822 . Bda12g00902 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016664 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 7