Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00903 ATGATGCAGCAGCCGGGTGCTGGTATGGTTCCATCGTCGCAGATGCCTCCTATGTCGTCCGATCAGTTTACTCAGCAGTACCAACAGCACCAGCAGTGGATGATGAGCCAGCCGCATCAACAGGCTCTTTCCCAGCCGATTCCACCTCCATCTGGATGGGCCCCGCAGGGGGTGCCTCCGCCTATGCAGGCGCTGGGACATCAATACTCTGGCGATGCTAATGCTGGATCTAATGAGGTTCGATCTCTTTGGATAGGAGACTTGCAACAGTGGATGGATGAAAACTATATTATTAGCTGCTTCTCTCACACTGGAGAGTTTGTTTCCGCCAAGGTGATTCGAAATAAAATAACGGGCATGCCTGAGGGATATGGTTTTGTTGAGTTTGTCAGTAATGCTGCTGCTGAGAAAATTTTACAAAGTTATAATGGTACATTAATGCCAAATAGTGAACAGAATTTTCGATTGAACTGGGCAACCTTTGGTGCCGGTGAGAAGCGTCAAGATGATGGCCCTGAATTTACAGTTTTCGTGGGAGATTTGGCTGCTGATGTTAATGACTATACACTGCAAGAAACGTTTAAATCAGTGTACCATTCTGTCAAAGGAGCAAAAGTTGTCACTGATCGAACCACAGGACGTTCTAAAGGTTATGGGTTTGTCAAGTTTGGCGATGAAAATGAACAAATGCGTGCCATGACGGAAATGAATGGTATTTATTGTTCCTCAAGACCCATGCGTGTTGGACCTGCAGCTACAAAGAAATCTGTTGGTGGATCACAATACCAGAATGCTAGTTACCAGAACACACCCGGAAATCCTGGGGAAAATGACCCAAATAATACAACAATATTTGTTGGGGGCTTGGACTCCAGTGTAACAGATGATGTGTTGAAACAAGTTTTTGGCCAATTTGGAGAGCTTGTTCATGTGAAAATACCCATGGGAAAGCGGTGTGGTTTTGTTCAGTTTGCTAACAGAATGAGTGCGGAACAAGCATTATCAATGTTGAATGGAACTCAACTGGGTGGACAGAGTATTCGTCTTTCATGGGGCCGTAGTCCTTCAAATAAGCAACAGCCAGATCAGGCCCAGTGGAATGGTGGTGGATATTATGGGTATGGACAAGGATATGACACATACGGATATACTCAAAATCCACAAGACCCTAATATGTATTATGGAGGATACCCTGGGTATGGTAACTACCAGCAGCCGGGTTCTTACCAACGACCACATCAGGTAAATTATTTAATCGATTGA 1263 44.89 MMQQPGAGMVPSSQMPPMSSDQFTQQYQQHQQWMMSQPHQQALSQPIPPPSGWAPQGVPPPMQALGHQYSGDANAGSNEVRSLWIGDLQQWMDENYIISCFSHTGEFVSAKVIRNKITGMPEGYGFVEFVSNAAAEKILQSYNGTLMPNSEQNFRLNWATFGAGEKRQDDGPEFTVFVGDLAADVNDYTLQETFKSVYHSVKGAKVVTDRTTGRSKGYGFVKFGDENEQMRAMTEMNGIYCSSRPMRVGPAATKKSVGGSQYQNASYQNTPGNPGENDPNNTTIFVGGLDSSVTDDVLKQVFGQFGELVHVKIPMGKRCGFVQFANRMSAEQALSMLNGTQLGGQSIRLSWGRSPSNKQQPDQAQWNGGGYYGYGQGYDTYGYTQNPQDPNMYYGGYPGYGNYQQPGSYQRPHQVNYLID 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39764547 39768751 + Bda009438.1 Bda12g00903 17918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00903 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 354 IPR000504 GO:0003723
Bda12g00903 420 SMART rrm1_1 82 157 IPR000504 GO:0003723
Bda12g00903 420 SMART rrm1_1 283 350 IPR000504 GO:0003723
Bda12g00903 420 SMART rrm1_1 175 249 IPR000504 GO:0003723
Bda12g00903 420 CDD RRM3_NGR1_NAM8_like 281 352 - -
Bda12g00903 420 MobiDBLite consensus disorder prediction 1 42 - -
Bda12g00903 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Bda12g00903 420 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 24 405 - -
Bda12g00903 420 SUPERFAMILY RNA-binding domain, RBD 160 274 IPR035979 GO:0003676
Bda12g00903 420 MobiDBLite consensus disorder prediction 1 56 - -
Bda12g00903 420 CDD RRM2_SECp43_like 173 252 - -
Bda12g00903 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 405 - -
Bda12g00903 420 SUPERFAMILY RNA-binding domain, RBD 68 160 IPR035979 GO:0003676
Bda12g00903 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 151 IPR000504 GO:0003723
Bda12g00903 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 246 IPR000504 GO:0003723
Bda12g00903 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 348 IPR000504 GO:0003723
Bda12g00903 420 SUPERFAMILY RNA-binding domain, RBD 269 382 IPR035979 GO:0003676
Bda12g00903 420 CDD RRM1_SECp43_like 82 162 - -
Bda12g00903 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723
Bda12g00903 420 Gene3D - 262 387 IPR012677 -
Bda12g00903 420 Gene3D - 162 261 IPR012677 -
Bda12g00903 420 Gene3D - 80 160 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00903 - - - jre:108984045 598.586
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00725 Bda12g00903 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00111 Bda-Chr1:17078961 Bda12g00903 Bda-Chr12:39764547 5.79E-157 dispersed
Bda08g00793 Bda-Chr8:10909969 Bda12g00903 Bda-Chr12:39764547 1.29E-117 dispersed
Bda08g00827 Bda-Chr8:12514962 Bda12g00903 Bda-Chr12:39764547 1.48E-121 dispersed
Bda12g00903 Bda-Chr12:39764547 Bda05g00725 Bda-Chr5:55622836 0 wgd
Bda12g00903 Bda-Chr12:39764547 Bda07g00359 Bda-Chr7:4590208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00909 Blo10g00824 Bda05g00725 Bda12g00903 . Bpe03g00795 . Bma14g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65