Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00904 ATGAGGCAGGAGAGAAGAATAGGAATATACTCTGAGTTCTGTGAGCAACGTGCAGTTCTCTTCTCCACCGATGTGGTATCAAGAGGTCTTGATTTTGATAAAGCAGTTGACTGGGTTGTACAGGTGGATTGTCCTGACAATGTAGATTCTTACATTCACAGAGTTGGGCGAACTGCACGATATCAATCTAAAGGGAGATCGGTGTTGTTTCTTATTCCTTCGGAGATGAAAATGCTAGAAAAACTACAAGAAAAGAAAGTTCCCGTGAATTTCGTCAAGGCAAACTTAAATAGACTTCAGCCGGTTTCTGGATTACTTTCAGCTTTATTAGTTAAGCATCCAGAAATGCAGCAGCTGGCTCAGAGAGCCTTCATCACTTACATGCGATCGATAAACATGCAGAGTGACAAGGAAATTTTTGACATCACAAAAATGCCTATAGATGAGTTTTCAGCATCATTGGGACTCCCTATGACCCCAAAAGTTCGTTTTTTGAACCAGAAAATTAAGCGTATAAAAGCAAATGGGAAGCCCGATGTGGAAAATTCTGACAAGGATATGGATGCAAATATTTCAAGGAAGAAGCTAGACATTGGTGACTTAGATGAAGAAATAGTTAACAAATCGCCTATTTCAATGGACAACATCCCTAAGGACATGGTAGACAAAGCAGGCTAG 678 40.27 MRQERRIGIYSEFCEQRAVLFSTDVVSRGLDFDKAVDWVVQVDCPDNVDSYIHRVGRTARYQSKGRSVLFLIPSEMKMLEKLQEKKVPVNFVKANLNRLQPVSGLLSALLVKHPEMQQLAQRAFITYMRSINMQSDKEIFDITKMPIDEFSASLGLPMTPKVRFLNQKIKRIKANGKPDVENSDKDMDANISRKKLDIGDLDEEIVNKSPISMDNIPKDMVDKAG 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39770394 39771970 - Bda009439.1 Bda12g00904 17919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00904 225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Bda12g00904 225 Gene3D - 1 188 IPR027417 -
Bda12g00904 225 Pfam Helicase conserved C-terminal domain 1 61 IPR001650 -
Bda12g00904 225 Pfam Domain of unknown function (DUF4217) 106 162 IPR025313 -
Bda12g00904 225 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 3 182 - -
Bda12g00904 225 CDD SF2_C_DEAD 1 71 - -
Bda12g00904 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 105 IPR027417 -
Bda12g00904 225 SMART DUF4217_3 101 164 IPR025313 -
Bda12g00904 225 SMART helicmild6 1 62 IPR001650 -
Bda12g00904 225 PANTHER RNA HELICASE 3 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00904 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - qsu:112032940 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00904 Bda-Chr12:39770394 Bda11g00092 Bda-Chr11:1066478 1.87E-19 dispersed
Bda12g00904 Bda-Chr12:39770394 Bda13g01265 Bda-Chr13:35043466 1.20E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00904 Bda_Chr12 FPKM 11.841908 12.312314 7.1593 7.314019 6.858198 6.134943 8.676519 7.204196 6.445596