Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00914 ATGGTTCAGATCGTGAAGAGGAAGAAGGGGAGGCCGTCTAAGGCAGATCTGGCACGCCGGTTCAGCGAATCTCCGGCGGTCGAACCGGTTGTCCGGCGAAGTCACCGGCGTAGAAATGTGAGGTACAACATAGACTATGACGACTATCTGGACGACGAGTACGATGACGAGGAAGAGGATGAGAGGTTGCAGAAGAAGCTCAAGCTGAAGCTTGTGGTGAAGCTGAACCAAGGCGAAAAAGAAGCTGAGCCGGAGCTAAGCGGAGCTCTCACGGAGTTGCGTGGTACCCACGCGCTAGGCGATTCCGAGTCTCAGTCCGAGGAGGACGAGTCGGAAAGGAAGCTTTTAAAGAAGAGGAGGATTGGCCATGTTAAAGAGGACGATGAAAAAGAGGAAGACGACGACGGTGAAAATCTGGGGGTTGCTGAGGATGAAGATGAAGATGAAGATAACCTAAGGGTAATTGGCTCAAAAGGATCGAAATCTGTTCCAGGTTTTTTTTCTGATCTCTGTCTTGATTCACTCTGGACTCCATCTGACACTCAATCTGGGATACCACTTCCTGACAAGAAAACACTGGAATTGATCCTCGACAAACTTCAAAAGAAAGACATTTATGGTGTGTATGCCGAACCAGTTGATCCTGATGAGGTGTGGAATCGTCCTTATTATGAGTTGAGTTTGATGTTGCAGCTGCCTGATTATCACGATGTAATTGAGCATCCGATGGATTTTGCTACGGTGAGGAAGAAATTGGCTGGTGGAGCCTATTCAACTCTGGAACATTTTGCGACTGACATATTCCTTATTTGCTCAAATGCAATGCAATATAATGCACCAGAGACCGTATACTATAAACAGGCCCATACCATACAAGAGCTTGCAAAGAAGAAATTTGAAAGGTTAAGAGTCGATTATGAAGGCTCTGAGAAAGAGCTAAGGCTAGAGCAGAAAACAAAATCCAATCATTTAGTCAAGAAACTGGTAAAAAAGCTGCCAGGCCGGATCCCACAGGAACCAATTGGATCAGATTTCTCCTCAGGTGCTACTCTTGCCACTGCTGGAGATGTTCAGAACTGTTCCTATCCAACCCAAGGTGGTAATGATGAGAAAAATGGCAATATCGATGGACATGTAGAAGGAAGTTCTTCTCTATATGATAATAATTTGGAGAAAGCAGAAGAATCACTTTTAGGTAAGGGGTTCTTATCTAGATTAGGGAGAAAGCCCGTGCTGCTTGATGAAAACCGTCGAGCAACATATAATATTTCTAATCAGACAGAAGTCAGATCAGAATCAATATTATCAACCTTTGAAGGAGAAATGAAGCAGCTTGTTGCAGTTGGCCTTCATGCAGAATATTCATATGCCAGGAGCTTGGCTCGTTTCGCTGCAACTCTTGGGCCTGTTGCTTGGAAAGTTGCCTCCACGAGAATTGAGCGGGCCCTTCCTGATGGGTGTAAATTTGGCTTAGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCAGTACTAATATTTGAGAATCACAATCTGAAGGAATTTGGTTTATTTCCTCCCTCGTCTTCTGTTGCAGAAGAATTAAGAAAGAATGAGAAATTGTTAACTATCTCTTTTCCTTCCAAGGAGAACAGCATGAATGGCCCTAATACAGAGGTGAAACAATCTTTGTTGGATGCTACTAGGAGGGATACTTCAGATGTCAAACCAGTATTGTTTGCTCCGGGAGGGATTAAACATAATTTACCGTTAAATGCTGCATATCAGCAGCAAAACCTGCAATCCAGCAATTTTACAAAACCGAGCAAGATGAATAATCAGTTTGAGTTGAACTTGTTACCCACCGCTATTCAGAATAATGCTGATCCTGTCTCAGAAAAGCAATGTTCGAATAATTCACAATCTATTGCTTCCAGGTCCACAGACTCTGCCCCTGTTAAAATGAGTCTTCTATCATGTGGATCTTTTAAACTGCCAGATTCTAATGGTGCTATCACTGCAGTATTACCAAATGGAAAAAGAGTGAGCGATTGCTTAAATACTCATCCTGCTATAGTTTCTTCTGATAGTCTAGCTAGAGTGGCAGCATGCTCCTCCCATGGCCAAGAGCAGGGTCTTGCTGACCCAGTTCAGTTAATGAGATCCTTGAGTGAAAAGTTTCAAAGGAATCAGATATATTCAAATCAAGGTCCAGTAGAAGCTCCTCCAGTTATGACAGTTGAGTGCAATACCAGAAAGAATAATGAATCCAACAATGCTTCCATGGCAGCTGCCCGTGCTTGGATGTCTGTTGGGGCTGGAGGTTGTAAGAAAATTACAGAAAATCCTCTTCTGCCAAATAATCACATATCTGCAGACTCACTATACAACCCAGCCAGGGACTTTAATCCACAAATCACTCGAGCTCGTGTGGAGCCTTCTAGTGCTGTGGGGAACAAATTTCATTCTGAGAAGAATGGAATCCCCTTGCAGACAAGTTTACCTCAGCCTGTCCGTATGGACAATGAAGCACAGCTGCGAAATCAACCTATAGTTTTTCCACAGTTATCTCCTGCCGACTTGTCTAGGTTTCAAGTGCATCCCCATTGGCAAGGTCTTAGCCCCCGTGCCCAGCCAAAGCAAAAGCAAGAAATGTTTCCCCCAGACTTGAACATTGGCTTCCAGATCTCCAGTTCTCCTGTTAGGCAATCCTCTGGTGTCCAAATGGACTCACAGCAGCCAGACCTGGCTTTGCAACTTTGA 2742 44.24 MVQIVKRKKGRPSKADLARRFSESPAVEPVVRRSHRRRNVRYNIDYDDYLDDEYDDEEEDERLQKKLKLKLVVKLNQGEKEAEPELSGALTELRGTHALGDSESQSEEDESERKLLKKRRIGHVKEDDEKEEDDDGENLGVAEDEDEDEDNLRVIGSKGSKSVPGFFSDLCLDSLWTPSDTQSGIPLPDKKTLELILDKLQKKDIYGVYAEPVDPDEVWNRPYYELSLMLQLPDYHDVIEHPMDFATVRKKLAGGAYSTLEHFATDIFLICSNAMQYNAPETVYYKQAHTIQELAKKKFERLRVDYEGSEKELRLEQKTKSNHLVKKLVKKLPGRIPQEPIGSDFSSGATLATAGDVQNCSYPTQGGNDEKNGNIDGHVEGSSSLYDNNLEKAEESLLGKGFLSRLGRKPVLLDENRRATYNISNQTEVRSESILSTFEGEMKQLVAVGLHAEYSYARSLARFAATLGPVAWKVASTRIERALPDGCKFGLGWVGEYEPLPTPVLIFENHNLKEFGLFPPSSSVAEELRKNEKLLTISFPSKENSMNGPNTEVKQSLLDATRRDTSDVKPVLFAPGGIKHNLPLNAAYQQQNLQSSNFTKPSKMNNQFELNLLPTAIQNNADPVSEKQCSNNSQSIASRSTDSAPVKMSLLSCGSFKLPDSNGAITAVLPNGKRVSDCLNTHPAIVSSDSLARVAACSSHGQEQGLADPVQLMRSLSEKFQRNQIYSNQGPVEAPPVMTVECNTRKNNESNNASMAAARAWMSVGAGGCKKITENPLLPNNHISADSLYNPARDFNPQITRARVEPSSAVGNKFHSEKNGIPLQTSLPQPVRMDNEAQLRNQPIVFPQLSPADLSRFQVHPHWQGLSPRAQPKQKQEMFPPDLNIGFQISSSPVRQSSGVQMDSQQPDLALQL 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39847068 39851656 - Bda009451.1 Bda12g00914 17929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00914 913 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 913 - -
Bda12g00914 913 SMART bromo_6 182 304 IPR001487 GO:0005515
Bda12g00914 913 PRINTS Bromodomain signature 248 266 IPR001487 GO:0005515
Bda12g00914 913 PRINTS Bromodomain signature 266 285 IPR001487 GO:0005515
Bda12g00914 913 PRINTS Bromodomain signature 232 248 IPR001487 GO:0005515
Bda12g00914 913 MobiDBLite consensus disorder prediction 889 913 - -
Bda12g00914 913 Pfam Bromodomain 196 289 IPR001487 GO:0005515
Bda12g00914 913 ProSiteProfiles Bromodomain profile. 201 285 IPR001487 GO:0005515
Bda12g00914 913 MobiDBLite consensus disorder prediction 128 150 - -
Bda12g00914 913 SUPERFAMILY Bromodomain 178 302 IPR036427 GO:0005515
Bda12g00914 913 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 913 - -
Bda12g00914 913 Gene3D - 188 323 IPR036427 GO:0005515
Bda12g00914 913 CDD Bromodomain 189 299 - -
Bda12g00914 913 MobiDBLite consensus disorder prediction 78 151 - -
Bda12g00914 913 MobiDBLite consensus disorder prediction 101 127 - -
Bda12g00914 913 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00914 K22184 BRD9; bromodomain-containing protein 9 - qsu:112014188 888.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00716 Bda12g00914 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00914 Bda-Chr12:39847068 Bda14g00648 Bda-Chr14:4851309 8.80E-79 dispersed
Bda12g00914 Bda-Chr12:39847068 Bda05g00716 Bda-Chr5:55556696 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00914 Bda_Chr12 FPKM 7.543259 6.393034 7.581642 7.18426 13.564872 14.178552 14.33532 15.477579 14.861955