Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00922 ATGAAAGAGGAGGAAGACTGTCTGTTGATTCCCCCAAAAAAGTTTTTCTCAAGCAAAACAGTGAAACATTCTTCTTCTACCTCAACAAAAGGCTTAACTACTGCCATGGATTCCGATAACAAGGATTTGAAAACTTTTCACGTCTTTGAAAGAAACTTCTTTCCCAGTATCGATTATTCTTCGCCAGAAACCATTCCAGTTCCGGTCAAGACAGACAACGAAGATGGCCAAGAGGAAAAACAGATCCAATCCGACGTCAATACGGCTTTAAATCTTCGGACAGCAAATTCAAATAGCGATCTAGATTCTGGAACATCAACATCGTACTGCGAGGAACATAGCAAACAGAAAAACAAACGGATTATGGAAGAGATGAAGGCAGAAATGGGGAGAATTAATATGGAAAATAATCTTTTGAGATGTACGCTTAATCAGATGAGTAAAGACTACTACAACCTTCAGATGCAGCTTGTTTCTCTCACGCAAAGGCAACAAATTAATCAAGATCATCATAAGATGGGTAGTGAACGATCCGAGGAAGATGATGAGAACAGCGGAGGAAAGTTCAAATTTCCTCGAAAGTTGATGGATTTGGGTCATCAAAATGACAATCAACTTTCAAATTCTTCTTCAGAAACGAAGTCTGCTAAAATTTTTGGAACTCCAAAGAAAAATCGTATAGCTTTTGGAGTTCACAACACAAGCGACAAATGTCTGGAAAAAGTGGATAATGATAAGAGAGAGAATAGAGCTAGTGTGAGAAATGGAAGAAATGAAAGCTCAAACCAAGCTGCTATTTCATGGCGACCGCCTGACAATGTGGACCGGCCGTCGGAAACTTTGAAGATGATAAAAAAAGCTCGAGTATCGGTCCGAACACGATCCGAAACATCCATGGTACCAGATGGGTGTCAATGGAGGAAGTATGGACAGAAAATGGCGAAAGGGAATCCATGTCCACGAGCTTACTATCGTTGTACAATGGGAGTTAATTGCCCAGTTCGCAAACAGGTACAAAGAAATGCAGAAGATCAAACAATTCTCATAACCACGTATGAAGGACAACACGACCATCCTCTTCCTCAAGCTGCGATGGCTATGGCCACAACCACATCGGCCACCGCTTCTATGGTTCTCTCGGGTCCAATGTCTAGCCAGGACGGCTCAATAAGAAACTCCGAATCACTCCCTCTATCGATGCTTAATTTCTCACCAACTTTAGCTACTCTTTCAGCTTCAGCCCCATTTCCTACTGTCACAATAGATCTCACTAACAAGCCACAAGGTGTTGCCCAGAATTCTGCATCTTTCCAGGAAATTGTTTCTGGTTTTCTCGGCCGCCAGACCGGATTTTTGGGTTCTGAAATGCCTGAATCTGGACATGATCAGAGTCAAACTCCTTCAATGGCTGATGCAGTAAGCGCAGCCACAGCTGCCATTACAGAAGACCCCAATTTGAGGGCAGCTCTTGTGGCAGCCATTGCTTCCATCTGTGGAAGCAGTCAGCTGGGCACGAATATTAACAACTCGACAAACGGCGACGGATAA 1548 43.02 MKEEEDCLLIPPKKFFSSKTVKHSSSTSTKGLTTAMDSDNKDLKTFHVFERNFFPSIDYSSPETIPVPVKTDNEDGQEEKQIQSDVNTALNLRTANSNSDLDSGTSTSYCEEHSKQKNKRIMEEMKAEMGRINMENNLLRCTLNQMSKDYYNLQMQLVSLTQRQQINQDHHKMGSERSEEDDENSGGKFKFPRKLMDLGHQNDNQLSNSSSETKSAKIFGTPKKNRIAFGVHNTSDKCLEKVDNDKRENRASVRNGRNESSNQAAISWRPPDNVDRPSETLKMIKKARVSVRTRSETSMVPDGCQWRKYGQKMAKGNPCPRAYYRCTMGVNCPVRKQVQRNAEDQTILITTYEGQHDHPLPQAAMAMATTTSATASMVLSGPMSSQDGSIRNSESLPLSMLNFSPTLATLSASAPFPTVTIDLTNKPQGVAQNSASFQEIVSGFLGRQTGFLGSEMPESGHDQSQTPSMADAVSAATAAITEDPNLRAALVAAIASICGSSQLGTNINNSTNGDG 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40323364 40327270 - Bda009467.1 Bda12g00922 17937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00922 515 ProSiteProfiles WRKY domain profile. 295 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00922 515 Pfam WRKY DNA -binding domain 302 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00922 515 Gene3D WRKY domain 285 362 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00922 515 MobiDBLite consensus disorder prediction 169 193 - -
Bda12g00922 515 MobiDBLite consensus disorder prediction 242 277 - -
Bda12g00922 515 MobiDBLite consensus disorder prediction 165 193 - -
Bda12g00922 515 MobiDBLite consensus disorder prediction 95 117 - -
Bda12g00922 515 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 48 505 - -
Bda12g00922 515 SMART WRKY_cls 300 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00922 515 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 48 505 IPR044810 GO:0003700
Bda12g00922 515 SUPERFAMILY WRKY DNA-binding domain 292 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00922 515 MobiDBLite consensus disorder prediction 95 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00922 - - - ming:122094100 320.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00712 Bda12g00922 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00922 Bda-Chr12:40323364 Bda15g00953 Bda-Chr15:17560389 1.22E-93 dispersed
Bda12g00922 Bda-Chr12:40323364 Bda15g00959 Bda-Chr15:17679033 5.34E-94 wgd
Bda12g00922 Bda-Chr12:40323364 Bda05g00712 Bda-Chr5:55382542 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g540 . . . . Bpe09g00165 . Bma10g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00896 . Bda05g00712 Bda12g00922 . Bpe03g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016612 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16814 PF03106 WRKY 1.30E-23 CL0274 Bda TF