Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00923 ATGGCTAGTGGTGTAGTACCCCCAGATGCTGGTGGCTTTCACGCTGTTTCATTTTCATATGGAAACCCTGATGAATCAAATGACCTTAAGAGTAATGATGCTGATTCTGGTTATAATCCACCTTTCCCGGTGCCAGAAAGTTTATTTCAGAACCTGCCTCCAACGGAAAAAGTACATCAGATTATTGCCAGAACTGCCTTATTTGTTAAAAAACACGGTGGCCAGTCAGAGATTGTTTTGCGGGTAAAACAAGGAGACAACCCTGCTTTTGGGTTTTTGATGCCTGACCATCATCTTCATGTATACTTTAGGTTTCTTGTTGAACATCATGAACTTCTAACATGTGACGCAAATGAAAAATTGACAAAAGAGAAGGAAGCTAGTAGTGGTGCTTTATCTTTGCTTGGCTCTGTGTATGGGACTGGCGAGGATGAAGATGTTACTGAGGAAAGTTATAACACCCAAATAAACAAGTCTGAGGATGCTGTTGATGTTAGTAATTCACTTATTTCTCAACAATCAGAACAGATACAATCTTCAACAAATAATGCTGGGAAGCCTGTGGTGCAGTCTAAGAAACCAGTTTATTCTTTGAAGGAAAAGGACCTGAACAACAAACAGACTTGTGCAAGTTCTGGTAAAGGTAGAAGTGCAATTAAAAGTAACACTGCCTCTTTACTTAGTCCTTCAAAGTCTGAACCTTCTGCTTTGCTGGGCACATCTAAAGTTGAACTACCTGTTTTGGAGCCTCCATCTGACATGAAGAAAGTGGTTGATAAGATAGTTGAGTTCATTCTAAGGAATGGAAGACAATTTGAGGCAGTTCTTGCCGAGCAGGATCGAAGTCATGGAAGATTTCCGTTTCTTCTGCCATCTAATCATTATCATCCTTACTATTTAAACGTCCTTAAAAAGGCGCAAGAGTCTAAGCTTTCCAGCAAGGGTCTTATTTCGGAAAAACATGAGTCTTTTGGACGTGGAATTGACAAGAAAAGTGCTTCATTAAGAGAAAAAATTGGTTCATCTTTGAAATCAACCGATGATGATATACCATGTGACTATGAAAGAAAGGACAAGTTTAAGATGGTGATTGGAAAATCAAAAAAGGAAGGTCTAGATGTACCTTCAAAACCCAACCTGCCACCAGCCGAATTCACTGTAGATGCAGCAGCTGCAGCTGCTATTCTTCAGGCTGCCACGCGGGGAATTAAGAATTCTAGTTTAGAAAATTTTTCTAAGACATCATTAATAGGAAGTGGTCATACTTCAAGCATCGGAAGCCTCTACTCATCTCAACCTGGATCTTCTATGCTTAAATTGGATCAGAAAGGAGAATCTGGTGTGCCTGTCCCAGTTGGAAAAGCTATTGCGGAGACTGGCAAGATTGCTGGTGTTAGTGAGGCTGACTCTTCTGAACGTGAGAAGAATTTGAAGAAGGCTGAAAGATTGAAACGTGCAAAGATTTTTGCAACAATGATAAAAGGTGGTTCTGTACCACTGAAAACAGAACCAGGAAGGGGGCTTTCAGTCGAACCTCTTGGCTCGGGGACTTCTACACCAGTTGCTGAGGCTACAGGCCTTGTGGATAAAGAAAGAGAAGGAAGTTCTGATCCGTTCAAGTCTTCAAAGTTCGAAAAGAACAATTCCGACTCAAATAATGATCGGAGATCAAAGAGGAGCTACCGATCTAGAGCTGATAGACCTGGTAGCGATATGGAAGGAAGTGAGAAGGAAGAAGAAGAAGAAGAAAAAAGGGAACATAAACACTCTAGGAAGAAGCACCGTTCTCATCGATCTTCACACAAGCACAGGAAAAGGCACTCCTCCAAGCATAATCGCTCATCAGATTGTGAACTTCAGGATAAGCAAAGGGACTCAACCGATGATAATCATAGACGTTCTAAATCCAGACGTCGGAATAAGAACACCAAGGACGAGAAACAGTCTAAACACGAGAGCTCCTCCGAAGAGGAACGATGGAATTCCCGAAGTAAGCACAAGAATTATGGGTCTTCTAGCGATGAAAGTCCGCATCGAAGAAGGGCCTCAAAGCGAAAGACGGTTCACTCTACAGATTTGGAGGAGGGAGAGATAAATCCATCAAAGGCTAGCAAAATCGAGACTGGCAGCCGGGATCCTTCCGAAAGCTTTGCAAAATTCAATCATGGTATACGGGCTCAATCAGAGCCGTCGAATACTGTTGAAGCACCCGAAGATCTTAAAGCCAAAATCCGAGCAATGCTTATAGCAACATTGTGA 2259 42.01 MASGVVPPDAGGFHAVSFSYGNPDESNDLKSNDADSGYNPPFPVPESLFQNLPPTEKVHQIIARTALFVKKHGGQSEIVLRVKQGDNPAFGFLMPDHHLHVYFRFLVEHHELLTCDANEKLTKEKEASSGALSLLGSVYGTGEDEDVTEESYNTQINKSEDAVDVSNSLISQQSEQIQSSTNNAGKPVVQSKKPVYSLKEKDLNNKQTCASSGKGRSAIKSNTASLLSPSKSEPSALLGTSKVELPVLEPPSDMKKVVDKIVEFILRNGRQFEAVLAEQDRSHGRFPFLLPSNHYHPYYLNVLKKAQESKLSSKGLISEKHESFGRGIDKKSASLREKIGSSLKSTDDDIPCDYERKDKFKMVIGKSKKEGLDVPSKPNLPPAEFTVDAAAAAAILQAATRGIKNSSLENFSKTSLIGSGHTSSIGSLYSSQPGSSMLKLDQKGESGVPVPVGKAIAETGKIAGVSEADSSEREKNLKKAERLKRAKIFATMIKGGSVPLKTEPGRGLSVEPLGSGTSTPVAEATGLVDKEREGSSDPFKSSKFEKNNSDSNNDRRSKRSYRSRADRPGSDMEGSEKEEEEEEKREHKHSRKKHRSHRSSHKHRKRHSSKHNRSSDCELQDKQRDSTDDNHRRSKSRRRNKNTKDEKQSKHESSSEEERWNSRSKHKNYGSSSDESPHRRRASKRKTVHSTDLEEGEINPSKASKIETGSRDPSESFAKFNHGIRAQSEPSNTVEAPEDLKAKIRAMLIATL 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40332610 40335799 - Bda009468.2 Bda12g00923 17938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00923 752 SMART surpneu2 255 308 IPR000061 GO:0003723|GO:0006396
Bda12g00923 752 SMART surpneu2 59 112 IPR000061 GO:0003723|GO:0006396
Bda12g00923 752 SUPERFAMILY Surp module (SWAP domain) 38 108 IPR035967 GO:0003723|GO:0006396
Bda12g00923 752 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 10 751 IPR040397 -
Bda12g00923 752 ProSiteProfiles SURP motif repeat profile. 257 299 IPR000061 GO:0003723|GO:0006396
Bda12g00923 752 ProSiteProfiles SURP motif repeat profile. 61 103 IPR000061 GO:0003723|GO:0006396
Bda12g00923 752 MobiDBLite consensus disorder prediction 201 236 - -
Bda12g00923 752 PANTHER SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG 10 751 - -
Bda12g00923 752 MobiDBLite consensus disorder prediction 526 587 - -
Bda12g00923 752 MobiDBLite consensus disorder prediction 167 188 - -
Bda12g00923 752 MobiDBLite consensus disorder prediction 497 737 - -
Bda12g00923 752 Gene3D Surp module 54 110 IPR035967 GO:0003723|GO:0006396
Bda12g00923 752 SUPERFAMILY Surp module (SWAP domain) 240 303 IPR035967 GO:0003723|GO:0006396
Bda12g00923 752 MobiDBLite consensus disorder prediction 641 701 - -
Bda12g00923 752 MobiDBLite consensus disorder prediction 24 46 - -
Bda12g00923 752 Pfam Surp module 60 108 IPR000061 GO:0003723|GO:0006396
Bda12g00923 752 Pfam Surp module 256 303 IPR000061 GO:0003723|GO:0006396
Bda12g00923 752 MobiDBLite consensus disorder prediction 611 633 - -
Bda12g00923 752 Gene3D Surp module 243 314 IPR035967 GO:0003723|GO:0006396
Bda12g00923 752 MobiDBLite consensus disorder prediction 588 610 - -
Bda12g00923 752 MobiDBLite consensus disorder prediction 167 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00923 - - - qsu:112013017 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00923 Bda-Chr12:40332610 Bda10g00696 Bda-Chr10:41281994 1.32E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g541 . . . . Bpe09g00164 . . Bma13g01069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016228 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00923 Bda_Chr12 FPKM 34.809822 36.182262 44.479397 45.43515 13.183208 14.341633 13.852015 4.843369 4.019013