Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00925 ATGGAATCGGGTGGTACAGAAGCTGCTAGAATACTTCAAGAAATCGAAACATTAAAGTCCTCGAAGCTCGATATTGAGCGTCGGATTGCGGCTCTCGAAGCACAGCTCCGGGGGATGAAAGTTCAGCCGGAAAACGATGTTTCGAACTGCTCTTCTACTCCGGTGTACACGTTCGAATCCGACTTGCCTCAGAGATTTCCAGCTGAAATGATTTACAGATACAGTCGACACCTCTTGCTTCCCTCTTTCGGCGTCCAAGCTCAATCGAAGCTGTTGAACTCTTCCATACTAGTAATTGGGGCGGGGGGACTAGGTTCGCCAGCTCTGTTATACCTTGCAGCATGCGGTGTCGGTCGCTTGGGCATTGTTGATCATGATGTGGTTGAGCTCAATAACATGCATCGCCAGATTATCCATACTGAAGCTTCTATTGGTCAGTCAAAAGTGAAATCTGCTGCTGCTACTTGCCACTCGATCAACTCCAAAGTTCAGATTGTGGAACATATTGAAGCTCTTCGGACATCAAATGCTTTGGAGATTATGAGCAAATATGATATTGTAGTAGATGCTACAGATAACGCTCCAAGCCGGTACATGATTAGTGATTGCTGTGTCGTGCTAGGGAAGCCTCTCGTCTCTGGTGCAGCCTTGGGAATGGAGGGGCAGCTCTCAGTATACAATTATAATGGTGGCCCGTGTTATCGATGTTTATTTCCCACTCCACCACCAACAACAGCATGTCAAAGATGTGCAGACAGCGGTGTCTTAGGTGTAGTTCCTGGCATCATTGGCTGTCTCCAAGCCCTGGAAGCTATTAAAATAGCTAGTAAAGTTGGTGAACCACTTACAGGAAGGATGCTTCTGCTTGATGCATTATCGGCTAGGATCCGTATTGTCAAGATTCGAGGGAAGTCGTTGCAATGTGAGGTTTGTGGAGAAAGTGCTCAATTCAATGCACAGAAATTCAGAGAATTTGATTATGAGAAGTTCACTCAGTCCCCTCTATCTACGACTCCACCGAAGTTAAAGCTGCTTGAGGCAGATTCAAGAATAAGCAGCAAAGAGTACAAGGAGCGAATCATTAGTGGCGAGGCTCATGTTTTGGTGGACGTTCGACCAAATCACCACTTCAAGATCGTTTCTCTGCCAAACTCCATAAACATCCCTCTTTCAAGCTTGGAGGCTCGATTATCAGAAATATCGTCGGCTTTGAAGGAAGAGGAAGATGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGAGCGGCGCTGCAGTACAAATTCTGGTAGTCATGCTAAATTATACGTGGTTTGTAGGCGAGGCAATGATTCTCAGAGGGCCGTTGAGTACCTCCACAAGAAGGGGTTTGATTCTGCCAAGGATATCATTGGTGGTTTGGAAGGCTGGTCTCGAGAGGTAGATCCAAGCTTCCCTACGTATTAG 1443 46.36 MESGGTEAARILQEIETLKSSKLDIERRIAALEAQLRGMKVQPENDVSNCSSTPVYTFESDLPQRFPAEMIYRYSRHLLLPSFGVQAQSKLLNSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQIIHTEASIGQSKVKSAAATCHSINSKVQIVEHIEALRTSNALEIMSKYDIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGMEGQLSVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASKVGEPLTGRMLLLDALSARIRIVKIRGKSLQCEVCGESAQFNAQKFREFDYEKFTQSPLSTTPPKLKLLEADSRISSKEYKERIISGEAHVLVDVRPNHHFKIVSLPNSINIPLSSLEARLSEISSALKEEEDEEEDEEEEEEEERRCSTNSGSHAKLYVVCRRGNDSQRAVEYLHKKGFDSAKDIIGGLEGWSREVDPSFPTY 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40374613 40378218 - Bda009470.1 Bda12g00925 17940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00925 480 MobiDBLite consensus disorder prediction 402 428 - -
Bda12g00925 480 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 71 447 IPR035985 GO:0008641
Bda12g00925 480 Gene3D - 68 317 - -
Bda12g00925 480 MobiDBLite consensus disorder prediction 404 421 - -
Bda12g00925 480 Pfam ThiF family 74 309 IPR000594 -
Bda12g00925 480 Pfam Rhodanese-like domain 354 471 IPR001763 -
Bda12g00925 480 Coils Coil 15 42 - -
Bda12g00925 480 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 6 465 - -
Bda12g00925 480 CDD ThiF_MoeB_HesA_family 73 301 - -
Bda12g00925 480 ProSiteProfiles Rhodanese domain profile. 362 478 IPR001763 -
Bda12g00925 480 SMART rhod_4 352 475 IPR001763 -
Bda12g00925 480 Coils Coil 390 424 - -
Bda12g00925 480 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 480 IPR028885 GO:0002143|GO:0004792|GO:0005829
Bda12g00925 480 Gene3D - 349 480 IPR036873 -
Bda12g00925 480 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 6 465 IPR045886 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00925 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - zju:107432745 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00946 Bda-Chr8:17754969 Bda12g00925 Bda-Chr12:40374613 1.38E-17 dispersed
Bda11g00268 Bda-Chr11:3145152 Bda12g00925 Bda-Chr12:40374613 4.12E-13 dispersed
Bda12g00925 Bda-Chr12:40374613 Bda13g00570 Bda-Chr13:6648249 4.21E-07 dispersed
Bda12g00925 Bda-Chr12:40374613 Bda11g01600 Bda-Chr11:49592764 3.15E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00502 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.5 4.1e-147 517.7
Bda14g00502 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.6 6.4e-114 407.1
Bda14g00903 . 38 274 Sulfurtransferasese/Rhodanese AT5G23060 50.2 6.2e-60 228.0
Bda11g00218 . 1 426 Sulfurtransferasese/Rhodanese AT4G01050 51.8 1.9e-119 426.4
Bda01g01650 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 57.4 8.6e-63 238.4
Bda01g01648 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 56.5 9.5e-62 235.0
Bda15g00120 . 91 459 Sulfurtransferasese/Rhodanese AT2G40760 72.7 1.1e-153 540.0
Bda03g01402 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.5 1.3e-64 243.0
Bda06g00622 . 1 305 Sulfurtransferasese/Rhodanese AT4G24750 59.3 3.4e-100 361.7
Bda09g01328 . 17 296 Sulfurtransferasese/Rhodanese AT5G19370 57.4 5.9e-84 307.8
Bda12g00925 . 117 480 Sulfurtransferasese/Rhodanese AT5G55130 70.3 1.7e-149 525.8
Bda06g00795 . 1 163 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.4e-74 276.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31