Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00934 ATGGAAGGTGTCGGGTCTAGGTTAGGCCGTGCTTCCTCCCGGTACGGTCCGACGACGACGGTTTTCAACGGGCCGGTCAGAAAATGGAGAAAGAAGTGGGTTCGCGTCTCTTCGTCGCCCACTCTAAGCTCCTCGACGACTCACTCTCAGTCCGGCGTCCACAAGCTCCTTCTCTGCCGTTGGACCCCTGTTCCGACAATTTCTCCGCCCCCTGCCACCGACTCGGACGCCGTTCCGGAGGAGCCGCCGAGACGCAAGTTTCGCTACACTCCTATTTCTGTGGTTGAAGAACAGAAAAATGCAGTTGTGAAGACAGTGGAGGATGGAGAAGGTAAAAGAAGAGTAGCAATGGCGGCCATGATTGAGGAGGTGCAGGAAAAGCCAAACATCGACCTCGTTTTCAAAGAAGAAACAACAATGGTTTCAGCTAAGAAGCTAATCAGCTTGAATGATCCAAACGAAAGTGATCTGGATTTAGGCTTGTGCTTAAATGGAAAAACCGGGAACCTTCGCTCGGTCGGATAA 525 52.19 MEGVGSRLGRASSRYGPTTTVFNGPVRKWRKKWVRVSSSPTLSSSTTHSQSGVHKLLLCRWTPVPTISPPPATDSDAVPEEPPRRKFRYTPISVVEEQKNAVVKTVEDGEGKRRVAMAAMIEEVQEKPNIDLVFKEETTMVSAKKLISLNDPNESDLDLGLCLNGKTGNLRSVG 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40449720 40450476 - Bda009479.1 Bda12g00934 17949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00934 174 PANTHER BNAC09G31710D PROTEIN 1 170 - -
Bda12g00934 174 PANTHER GOLGIN FAMILY A PROTEIN 1 170 - -
Bda12g00934 174 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00934 - - - csv:101212909 161.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00698 Bda12g00934 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00845 Bda-Chr7:9894102 Bda12g00934 Bda-Chr12:40449720 7.73E-22 dispersed
Bda12g00934 Bda-Chr12:40449720 Bda05g00698 Bda-Chr5:55282908 1.31E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g572 . . . . . . Bma10g00577 Bma13g01079 . . . Cma09g00970 Car01g00984 Car09g00884 Sed08g1927 Cpe06g00784 Cpe02g00789 Bhi09g01693 Tan01g3123 Cmetu01g0215 . Hepe01g1249 Mch11g1216 . . . . . . . . . . . . Lsi02g01881 . . . . . Bda05g00698 Bda12g00934 . . . . . Cmo01g01160 Cmo09g00970 . . . . . . . . . . . . . Cla09g01033 Cam09g1088 Cec09g1087 Cco09g1108 . . Cre09g1053 . . Chy01g01054 Cme01g00999
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007367 2 1 0 3 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00934 Bda_Chr12 FPKM 25.342136 27.770504 18.627295 19.620264 10.592662 9.041927 11.065538 35.148067 35.944275