Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00935 ATGGCGGTCACAGATGTACAAAATCCCCTGCTTGGAGAAACCACTTGTGGTTCCCTACTGCAGAAACTGCAAGAAATCTGGAATGAAGTTGGTGAAAGTGATGAAGAGAGGGATAAAATGCTGCTACAGCTGGAGCAGGAATGCTTGGATGTATACAAGAGAAAGGTTGAGCAGGCTGCCAAGTCGAGGGCACAACTTCTGCAGTCACTGTCAGATGGCAAGCTAGAACTTTCAAATCTTCTGACAGCTCTAGGAGAAAAAAGCTTTGTTGGGATTGCAGAGAAAACTTCTCAAACAATTAAGGAACAACTTGCTGATATAGCGCCAACACTTGCACAACTATTGAAACAGAAAGAAGTGAGGATGAAGGAGTTTTCAGATGTACAATCACAGATTCAGAAGATAAGTGGAGAAATTGCAGGGAAACTAAAACTTAATGAGACTCCAGCAGTTGACGAAGCTGACCTATCCTTGAAAAAACTGGAAGAGTACAGATTCCAACTTCAGGAACTCCAAAAAGAGAAAAGTGACAGATTGCAAAAAGTCCTCGAATTTGTGAGCACTGTGCATGATCTTTGTGCTGTCCTTGGAATGGATTTCTTTAGTGCTGTCACTGAGGTGCATCCAAGCTTAGATGACTCTACCAGTGTGCAATCCAAAAGCATCAGTGATGATACTTTATTGAGGCTGGAAAATACAGTCTTATTACTCAAGCAAGATAAGAAACAGAGGCTGCATAAGCTTCAAGAGTTCGCAGCTCAGCTAATTGATCTTTGGAATTTGATGGACACTCCCATTGAAGAAAGAAGGATGTTTGACCATATAACTTGTAATATGTCTGCTTCAGTAGATGAGGTGACTGTTCCCGGAGCTCTTGCCCTGGATTTGATCGAGCAGGCTGAGACAGAAGTTGAAAGACTTGATCAGCTCAAAGCTAGTCGGATGAAAGAAATTGCTTTCAAGAAGCAGGATGAACTTGAAGGGATATTTGCTCATACTCACATAGAAATAGATTCAGAGGCTGCTCGAGAAAACATTATGACCATGATCGACAGTGGTAATGTTGAGCCGGCTGAGTTAATAGCTAACATGGATAATCAAATAGCTCAAGCAAAAGATGAAGCCCTTAGCAGAAAAGAGATATTGGACAAGGTTGAGAAGTGGATGTCAGCTTGTGAAGAAGAGAGTTGGTTAGATGACTACAATAGGGATGACAATAGGTACAATTCAAGTAGGGGAGCGCATTTAAACCTCAAGCGTGCAGAGAAAGCTAGAGTTCTCGTCAATAAAATTCCAGCTCTTGTTGACTCATTGGTCGCCAAAACTCGAGCATGGGAAGAAGATCGAGGCGTATCATTTAGTTATGACGGTGTTCCTCTTCTTGCCATGCTAGATGAGTATGTCATGCTCAGGCATCAAAGAGAGGAAGAAAAACGAAGGATGAGAGACAGCAAAAAGTATAACGAGCAGCAAAACACAGACCAAGAAGCCAGTCTCGGTTCAAAGCTTACCCCAGTTCGCACAAGCAGCACGAAAAAGTCCATGGATGCCAGGGCAAATGCAAGTGGTAACGGAACGTCCACCCCGGGAAGACGTTTATCTGGTAATCATCATCAAAACGGAGCTAAATCGACATCGAGAGAAGGAAGAAGGGATAGTACAAGGCTCGCAGCCCCCGCAAATTACGTCGCCATCACAAAAGAGGACTCGGCATCTAACATTTCCGACAGTAATCCACCCGATTCAGCTTCACCATAA 1758 43.29 MAVTDVQNPLLGETTCGSLLQKLQEIWNEVGESDEERDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQSLSDGKLELSNLLTALGEKSFVGIAEKTSQTIKEQLADIAPTLAQLLKQKEVRMKEFSDVQSQIQKISGEIAGKLKLNETPAVDEADLSLKKLEEYRFQLQELQKEKSDRLQKVLEFVSTVHDLCAVLGMDFFSAVTEVHPSLDDSTSVQSKSISDDTLLRLENTVLLLKQDKKQRLHKLQEFAAQLIDLWNLMDTPIEERRMFDHITCNMSASVDEVTVPGALALDLIEQAETEVERLDQLKASRMKEIAFKKQDELEGIFAHTHIEIDSEAARENIMTMIDSGNVEPAELIANMDNQIAQAKDEALSRKEILDKVEKWMSACEEESWLDDYNRDDNRYNSSRGAHLNLKRAEKARVLVNKIPALVDSLVAKTRAWEEDRGVSFSYDGVPLLAMLDEYVMLRHQREEEKRRMRDSKKYNEQQNTDQEASLGSKLTPVRTSSTKKSMDARANASGNGTSTPGRRLSGNHHQNGAKSTSREGRRDSTRLAAPANYVAITKEDSASNISDSNPPDSASP 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40455596 40463826 + Bda009480.1 Bda12g00935 17950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00935 585 MobiDBLite consensus disorder prediction 475 585 - -
Bda12g00935 585 MobiDBLite consensus disorder prediction 491 542 - -
Bda12g00935 585 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 508 - -
Bda12g00935 585 Gene3D - 368 501 - -
Bda12g00935 585 MobiDBLite consensus disorder prediction 566 585 - -
Bda12g00935 585 Coils Coil 297 317 - -
Bda12g00935 585 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 4 580 IPR007145 GO:0000226|GO:0008017
Bda12g00935 585 Coils Coil 154 181 - -
Bda12g00935 585 PANTHER MICROTUBULE-ASSOCIATED PROTEIN, MAP65/ASE1/PRC1-RELATED 4 580 - -
Bda12g00935 585 MobiDBLite consensus disorder prediction 475 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00935 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - qsu:112012954 908.672
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00378 Bda-Chr7:4774191 Bda12g00935 Bda-Chr12:40455596 0 dispersed
Bda07g01834 Bda-Chr7:35582356 Bda12g00935 Bda-Chr12:40455596 7.37E-158 dispersed
Bda01g01772 Bda-Chr1:53963514 Bda12g00935 Bda-Chr12:40455596 4.48E-178 transposed
Bda12g00935 Bda-Chr12:40455596 Bda09g00408 Bda-Chr9:5092430 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g576 . Blo03g01459 . . . . . Bma13g01091 Cmo16g00948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00849 . Bda12g00935 . . . . . . . . Cma16g00913 . Car16g00886 Cpe14g00738 . . . . . . . . . . . . . . . . . Chy06g01848 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00935 Bda_Chr12 FPKM 0.564084 0.546639 0.985839 0.92464 3.396648 3.755952 2.606057 4.679172 4.356717