Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00937 ATGGATGTCGTGGCGGTTGGTGAAGGTACCGACTCGGGTGCAGCTCAATCGGGCGAGAAGCGGCCGGTTGAGAATGTGGGAGACGATGAAGAGGGTGGATCTCGGTTGAGCAAGAAGGCGAAGAGCAACGGTGAATTGGACAGAGAGCTTAAGAGGGTGGCGACGATTGTGCTTGCATTGTCGACGATGGCTACTATCCGTGCTGGGAAAAAACCGAGTGAGGCTGAGGTTGGTTTGATGATGGAGGCGAGGGCTAAACTGGCGGAGATATGTGAAGATTTTGCACCGAAGGATATCATTGAGAAAGATGGAATTGTTGCTGTAATTGAGGATTTGGGTCTTAATGGGAAAGATATAGATCAAACGCTTGGGTTTAGAGGACCTCGGCTGACGATAGTGGAGAAGTTGTCTCAGGCAAAGAGGAAGATGGAAGAATCCAAGAAATTTGTAGCCCCTACAGCCACATACACATCCCATCCTTTGCCAACCAGTTTTTCTATAACAGCTGAAAACCGTGGGATACCACCTACTCTTCGAACATTTCCGGCAGATAAGCCCAGTCATGTACAAATTTCTTCTGTAGGCGTTCCCACTTCTTTGCCCTCAGGTCTTGTTTCTGCTACTATTTCTACATCTTCACAGCTTCACATCTCTTCAAATGAAGGCAAACCATCAATTGTTCCCGGTGGATTCACTGTAAATCATCAAGGAAGGAATCCTCCCTCAGTGTCTAGATCCGATAGAACACCTAACGGGACTTATTTGTCCCATACACAAGCTATCCATTCTGCCACCCATATTTATTCATTCGGATATCTGCCAACAGCGTCTCCACCTGCTTGGCCTGTGCAAATGCAATCATTGTCATCAAGTAAAACTGGATCAGAGCAGAAGTTGGCAAATAATATTTCTTCCACTGCTCAGGGAGCTTCAGATGTCAGCATGTCAAGGCTGGCTTCTCAAGCTGCAAGAGATCAGAGCCTAAGACCACTTGGTACTCAAACAGTTCCTGCAAATTTGCCAGGGTTGCACCATACATTGCAGGGAGTAAACTTTGTTCAAGCTCCTTCACTTCTAAACAATCACAGTGAAATTGCAAGAATTGTTCAGAAGTTATTACAACTGCAGCTGCCTGATCATCCCACATGGACTCCTCCGTCAAGGGATTACATGAATAAGACCGTCACTTGTCAAAGTTGTCAGATTGCCGTCACTGATGTTGACAGTGTCCTTGTATGTGATGCCTGTGAGAAAGGATATCACTTGAAGTGTGTACAGTCCCTCACTCAAAGGGGAATACCTAGAGGCGAGTGGCATTGCCCCCGGTGTTTGGCATTAAGCAATGGGAAGCCTTTGCCTCCTAAATATGGTCGTGTGATGAGGAGTAATCCACCACCAAAGGTGACTACTAATCCCACTGGAGTTCCATCATCTCCAGAGAAAAAGGGAGGAATAATAGTTGCAAAGATTAATCAGCAGGAAGCAGGAGGTCATGGAGGCCATGATATGCAAACTCCTGAAGCCACTAGAATAGGCAGCGACTGTGTTGAATCAATATCTGTTTCCAAGACACTGAATGCAATAACAATGGACGGGAAGATTTTTTCAGATACTAAAGATGTAGGCGAGCAATTAAATTCTGTAACATCTCCAAATAATCTAGGCGAACTCTTAGAGCCGGGTTGTAGCTTCCCCTCTGTTGCATTCTCAAGTGAAACATCTGCTCAACATGTAAAGAATTCTGAACCACCAAACGACAGGGAGAGATTGTCTGCATTCAATACTGAGCTTCCTTCAAAATTACCTGACCAGGTTAGTGAAAAATGTGACGATCTCCGAACTGCAGATAATCCCTGCAATTTTAATGGGACAAAGCAATCTCACTGCCCAGAAATTTCATCTGAGAAATGTCATAATGACCAATGTTCTGTGGAAGATCCTGAGAAAGTCAACTTGACAGGAAGTTCTGAGGGAGCTGAGAAAGTCAACATGACAGGAAGTTCTGAGGACACTTCGATTCACACAATTAAGCAAGATGGCAAAGAAATTCCACACGCTAGCTCTGTTGGCGGAGAGTCATCTGTGTTTTCTTCAGATGGATTGCATGGTGTGGAATGGATGGGCAATGCGGACATTGCAGAGGGAAAAACATTTTATCAGTCTTGCAGCATTGGTGGAGTAACATATAAAGTTGGGGATCATGCTCTTTTTCATTCCACCAATGGGAAGTTGGCACCCTCTAAGCTTCAGGCAAGCATATTATCAAGCACTTCAATGTGGGAGGATAGCGATGCTGGGTCAAAGTCTGTTACTATTTACCAGTGTTACTTTCCCGATGACTTGCCGGAGAAAGTAGCTCGTCCTTGCCTCCATGAGAGCAATGAGGTCTATGAATCTAATCATGTTAGCACTGTAATGGCTGGCTTGATTCAAGGGCCATGTCAAGTTTTGTCTCTTCCCAAGTTTGAAGAAGAGAACGAAAGACGAAAGCAATCCGGGTTTGAAATTAATAATGGAGTGCATCCAGTTTTTCTTTGCAAGTATGGATTGAATCTTCATTTTTTGTTTCTCAGTACAACTTTCTATGATTTCCTTCTCGAACAGTTGTTTGTTACCCTTGCTCTTTTGTTACGGTATGGAACCACTTCAAAAATACCCCTCTTCTGCATGATTGTCCGCATTTATTATTCTATGGCGATCTAA 2703 44.32 MDVVAVGEGTDSGAAQSGEKRPVENVGDDEEGGSRLSKKAKSNGELDRELKRVATIVLALSTMATIRAGKKPSEAEVGLMMEARAKLAEICEDFAPKDIIEKDGIVAVIEDLGLNGKDIDQTLGFRGPRLTIVEKLSQAKRKMEESKKFVAPTATYTSHPLPTSFSITAENRGIPPTLRTFPADKPSHVQISSVGVPTSLPSGLVSATISTSSQLHISSNEGKPSIVPGGFTVNHQGRNPPSVSRSDRTPNGTYLSHTQAIHSATHIYSFGYLPTASPPAWPVQMQSLSSSKTGSEQKLANNISSTAQGASDVSMSRLASQAARDQSLRPLGTQTVPANLPGLHHTLQGVNFVQAPSLLNNHSEIARIVQKLLQLQLPDHPTWTPPSRDYMNKTVTCQSCQIAVTDVDSVLVCDACEKGYHLKCVQSLTQRGIPRGEWHCPRCLALSNGKPLPPKYGRVMRSNPPPKVTTNPTGVPSSPEKKGGIIVAKINQQEAGGHGGHDMQTPEATRIGSDCVESISVSKTLNAITMDGKIFSDTKDVGEQLNSVTSPNNLGELLEPGCSFPSVAFSSETSAQHVKNSEPPNDRERLSAFNTELPSKLPDQVSEKCDDLRTADNPCNFNGTKQSHCPEISSEKCHNDQCSVEDPEKVNLTGSSEGAEKVNMTGSSEDTSIHTIKQDGKEIPHASSVGGESSVFSSDGLHGVEWMGNADIAEGKTFYQSCSIGGVTYKVGDHALFHSTNGKLAPSKLQASILSSTSMWEDSDAGSKSVTIYQCYFPDDLPEKVARPCLHESNEVYESNHVSTVMAGLIQGPCQVLSLPKFEEENERRKQSGFEINNGVHPVFLCKYGLNLHFLFLSTTFYDFLLEQLFVTLALLLRYGTTSKIPLFCMIVRIYYSMAI 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40469950 40474116 - Bda009482.1 Bda12g00937 17952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00937 900 SMART PHD_3 396 444 IPR001965 -
Bda12g00937 900 SUPERFAMILY FYVE/PHD zinc finger 387 453 IPR011011 -
Bda12g00937 900 MobiDBLite consensus disorder prediction 1 43 - -
Bda12g00937 900 Gene3D - 706 854 IPR043151 -
Bda12g00937 900 MobiDBLite consensus disorder prediction 651 671 - -
Bda12g00937 900 MobiDBLite consensus disorder prediction 305 330 - -
Bda12g00937 900 Pfam BAH domain 727 848 IPR001025 GO:0003682
Bda12g00937 900 MobiDBLite consensus disorder prediction 22 43 - -
Bda12g00937 900 ProSitePatterns Zinc finger PHD-type signature. 397 443 IPR019786 -
Bda12g00937 900 MobiDBLite consensus disorder prediction 215 253 - -
Bda12g00937 900 ProSiteProfiles Zinc finger PHD-type profile. 394 446 IPR019787 -
Bda12g00937 900 MobiDBLite consensus disorder prediction 454 481 - -
Bda12g00937 900 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 849 - -
Bda12g00937 900 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 849 - -
Bda12g00937 900 MobiDBLite consensus disorder prediction 235 253 - -
Bda12g00937 900 CDD BAH 726 853 - -
Bda12g00937 900 CDD PHD_SF 396 443 - -
Bda12g00937 900 Pfam PHD-finger 397 444 IPR019787 -
Bda12g00937 900 ProSiteProfiles BAH domain profile. 727 861 IPR001025 GO:0003682
Bda12g00937 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 451 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00937 - - - zju:107403615 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00937 Bda-Chr12:40469950 Bda14g01056 Bda-Chr14:9017007 4.25E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16817 PF01426 BAH 4.00E-08 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00937 Bda_Chr12 FPKM 0.51126 1.005036 4.439267 5.254868 15.620342 13.426573 15.488235 5.182887 5.627079