Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00939 ATGGCCACGCTTCAACTACCTAGTCCCAAGGGATTAATCTCTACTTCTTCAATTTCCTCCTGTTTCCATCACAAGAGAGATGCAGGTACTGGAGGAAATCCACTTTTAGGGGAACAAGCGGCAGAAGAATCAAAGAAGCTATTGCTAAGTCTAGATGGCCACAGTTTGATGGGAGTGAGCTGTTCTTTTTCTTCTATGGACTCCGCCAAGATTAAGGTGGTGGGAGTCGGCGGTGGTGGGAATAATGCCGTCAATCGAATGATTCGCAGTGGTTTACAGGGTGTTGATTTCTATGCCATAAACACAGATGCCCAAGCGCTAGTCCAGTCTGCTGCTGAGAATCCATTACAAATTGGAGAGCTTTTGACTCGTGGTCTAGGTACTGGAGGAAATCCACTTTTAGGGGAACAAGCGGCAGAAGAATCAAAAGAAGCTATTGCTAATAATCTCAAGGGCTCAGATCTTGTATTTATAACGGCAGGTATGGGTGGAGGTACAGGATCTGGCGCTGCTCCAGTTGTTGCTCAAATCTCAAAAGAGGCTGGTTATTTGACAGTTGGTGTGGTTACCTACCCGTTCAGCTTTGAGGGAAGAAGAAGATCCATGCAGGCAGGTGTTTGTGTGTGTTTTGGTTGTTTTCAGGCATTGGAGGCTATTGAGAAGTTGCAGAAAAATGTTGATACTCTTATAGTGATTCCTAATGATCGCCTGCTTGACATCGCCGATGAGCAGACTCCCCTACAGGATGCTTTCCTTCTCGCTGATGATGTTCTACGTCAAGGAGTTCAAGGAATTTCAGACATTATCACTATCCCGGGACTGGTCAACGTGGACTTTGCCGATGTAAAGGCAGTCATGAAAGACTCTGGAACTGCGATGCTCGGAGTAGGAGTTTCCTCTAGCAAGAATCGGGCAGAAGAGGCAGCTGAACAAGCGACCTTGGCTCCCCTGCTTGGATCATCTATTCAATCAGCTACTGGAGTAGTTTATAATATTACTGGAGGAAAAGACATAACCCTGCAAGAAGTTAACAGGGTTTCTCAGGTCGTGACCAGTTTAGCTGATCCTTCTGCAAACATAATCTTTGGCGCAGTTGTGGATGATCGATATAATGGTGAGCTTCACGTTACAATAATTGCAACGGGTTTCTCGCAGTCATTCCAGAAGAATCTGTTGACAGACCCAAGGGCTGCAAAGCTGGTGGACAAAGTAGAGAGCAAGGATGTAACTCTCCCTTACAAGCCCTTAAACTCTCCAACCGTTGCAACCAAATCCGGCCATAGAAGGCTCTTCTTTTGA 1299 45.96 MATLQLPSPKGLISTSSISSCFHHKRDAGTGGNPLLGEQAAEESKKLLLSLDGHSLMGVSCSFSSMDSAKIKVVGVGGGGNNAVNRMIRSGLQGVDFYAINTDAQALVQSAAENPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIANNLKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRRRSMQAGVCVCFGCFQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLLGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGELHVTIIATGFSQSFQKNLLTDPRAAKLVDKVESKDVTLPYKPLNSPTVATKSGHRRLFF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40478091 40482124 + Bda009484.1 Bda12g00939 17954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00939 432 Pfam FtsZ family, C-terminal domain 290 383 IPR024757 -
Bda12g00939 432 PANTHER CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC 26 47 - -
Bda12g00939 432 SMART Tubulin_C_4 275 392 IPR018316 -
Bda12g00939 432 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 163 169 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bda12g00939 432 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 26 47 IPR045061 GO:0003924|GO:0005525
Bda12g00939 432 Gene3D Tubulin/FtsZ, GTPase domain 58 288 IPR036525 -
Bda12g00939 432 Gene3D - 289 395 IPR037103 -
Bda12g00939 432 PANTHER CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC 60 432 - -
Bda12g00939 432 ProSitePatterns FtsZ protein signature 2. 154 175 IPR020805 GO:0005525
Bda12g00939 432 PRINTS Cell division protein FtsZ signature 280 301 IPR003008 GO:0005525
Bda12g00939 432 PRINTS Cell division protein FtsZ signature 155 175 IPR003008 GO:0005525
Bda12g00939 432 PRINTS Cell division protein FtsZ signature 257 279 IPR003008 GO:0005525
Bda12g00939 432 SUPERFAMILY Tubulin nucleotide-binding domain-like 69 276 IPR036525 -
Bda12g00939 432 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 60 432 IPR045061 GO:0003924|GO:0005525
Bda12g00939 432 SUPERFAMILY Tubulin C-terminal domain-like 275 391 IPR008280 -
Bda12g00939 432 ProSitePatterns FtsZ protein signature 1. 101 135 IPR020805 GO:0005525
Bda12g00939 432 CDD FtsZ_type1 86 382 IPR000158 GO:0003924|GO:0005525
Bda12g00939 432 TIGRFAM ftsZ: cell division protein FtsZ 66 391 IPR000158 GO:0003924|GO:0005525
Bda12g00939 432 Pfam Tubulin/FtsZ family, GTPase domain 70 241 IPR003008 GO:0005525
Bda12g00939 432 SMART Tubulin_4 70 273 IPR003008 GO:0005525
Bda12g00939 432 Hamap Cell division protein FtsZ [ftsZ]. 66 426 IPR000158 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00939 K03531 ftsZ; cell division protein FtsZ - qsu:112038062 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01047 Bda-Chr4:61329167 Bda12g00939 Bda-Chr12:40478091 2.71E-64 dispersed
Bda05g01166 Bda-Chr5:59731727 Bda12g00939 Bda-Chr12:40478091 2.35E-95 dispersed
Bda12g00939 Bda-Chr12:40478091 Bda05g00694 Bda-Chr5:55217221 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00939 Bda_Chr12 FPKM 14.661233 17.198524 21.568747 22.05685 16.904684 17.152885 18.58099 15.753402 13.055393