Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00948 ATGGAATCGGATCTTGGGAAGCTCTTCATCGGTGGAATTTCTTGGGACACGGATGAAGAACGTCTTAAAGAATACTTCAGGAGATACGGAGAGGTGGTGGAGGCCGTAATTATGAGAGATCGAGCCACAGGCCGAGCTCGTGGGTTCGGGTTTCTCATTTTTGCTGATCCATCTGTTGCCGAAAGAGTCATTTTGGAGAAACATGTGATCGATGGTCGAACTGTTGAAGCAAAGAAGGCAGTTCCCAAGGAAGATCAGCACATAAGTAGTAAGAACTCTGGTAGCATTAATGGCTCACCTGCTCCGGCACGAACAAAGAAGATTTTCGTCGGAGGTTTAGCATCTACAGTCACCGAGAGCGATTTTAAACGATACTTCGATCAATTTGGCTCGATAACCGATGTTGTAGTGATGTACGATCATAACACGCAAAGGCCAAGAGGTTTTGGGTTCATAACTTTCGAATCGGAAGAAATTGTGGACAGAGTTCTACACAAAACATTTCACGAACTTTACGGGAAGATGGTCGAGGTCAAAATAGCAGTCCCAAAGGAGCTCTCTCGGGGGCCAAATCGAAGTGCTTTAGGAGCAACTAACATAGCTTCTCCTGGAGGTTTTGGAATTCGAATGGATAGGTTCAGTCCAACATCAAATATTCCTTCTGGCTTTTCCACGTTTGGGAACCCTAATTATGGAAATGGAAGAAATGCCAACTTTGGAAGTAAAATAGGAAGTGGACAGACGATGAGTGCTTATTACAATGGCAATCCAGGCCGATACACGACCCCCATTGGTTTCAACGGGGGCATTGGAGTTATTGTGAGAATTAGATCTGCTAATGAGGAAAAGAGGCAAGGAGATCTGAAAGTCAGGAAGCTCTCTTCTGATACTTTATCTATTCTGGAACGAGAATTTGCTTTTGACCACGTTTTCGATTCAGAATCGAAACAGGACGACATTTTCCAGCTGGTGGGCATTCCTTTGGTTAAAAATGCGTTGGGTGGTTACAACACTTCTATCTTGTCCTGTGGTCAGACTGGAACCGGCAAAACATACACAATGTGGGGTCCACCTAGTGCCATGGTGGAAGATATATCACCTGCTAGTAGCCAAGGCATTGTTCCTCGCATTCTCAAAATGCTATTCTCGGAGATTCAGAAAGAACATGAAAACTCTGAAAAGAAACAGATAAATTATCAGTGTCGTTGTTCTTTTCTTGAGGTTTATAATGAACAAATAGGGGATTTACTTGATCCTACCCAGAGAAACCTTGAGATAAGGGATGATGCAAAAAGTGGATTGTACATTGAGAACTTAACTGAAGAATATTTGACAAGCTACGAAGATGTGATTCAGATTCTAATAAAGGGACTTTCAAGCAGAAAAGTAGGGGCAACCACAGTAAATTCTAAGAGCTCTAGATCCCATGTTATGTTTAACTTCATCATTGAGTCATGGAGTAAGGGAAATTCAACGAGTTTTGGTAGCTCAAAAACAAGCAGAGTCAGCTTTATTGATCTTGCTGGTCTGGATAGAAACCTAAAGGATGATGTGGATAGAAAATGTTCGAGGGACGCCAAGAATTTGAAGAAGTCTCTGTCACGACTTGGGCATTTGGTGAATACTCTATCAAATGAAACTCGTTGTGGGAAAGCTGAAGATTCTTTATACAAAAGTTCATCTTTGACTCGTCTATTACGAGATTCACTCGGAGGAAATGCCAAGCTCACAGTTATATGTGCAATTTCGCCAGATAAAAAATATATTACGGAAACTCTAAAAACTCTCAGATTTGGACAACGACTGAAATGCATAAAGAACATACCAGTGATAAATGAAATAACAGAAGATGATGTGAATGATCTGAGTGATCAAATTCGTAAGTTAAAGGAAGAACTTATAAGAGCCAAGTCATCATCGTGCAACAGTTCAATGGGAAGCTTAAATGGATATTTTCAAGGCCAAAATGTAAGAGAAAGCTTGAATCAGTTAAGACTTAGCCTTAATCGATCGCTTATTCTGCCTGGGATGGGCGGCAACGATGATAAACATGTTAATTTTGCTGAGCAAGACGTCAAGGAATTACATCAACAGCTACATGAGTTGAATATTTCCATTGACTCAATTGCCAAAAGGGATTCCCTTGAGTTTTCATCAGCTGGAGAAAGTTTTGAAACAGACTCAGTAAGTGATGATGATGATGTAAATAGTCCGGAAGAGGAAACTGACAAACCTCAGAATGACACCACTGAGTCATTATATTGCGTTTCTAGTGAGACCGTCACCTCAAAGTCTATTGAGACTATGATCAGAAGTAGCCTTTCGATCAACTCCGGTTGTCGGTCTCCTATTCTGGAAGATCCCCCATTGTCTGAATCTCCCAAAATTGGAAGATCTCTAAGGAAGAGCATGGCCATATCATCAAGTTTATCACTTTGTCATAGCGATATGTCAGAGAGTTCCAAACTCAAAAATGATGAATCAACGCAGTTGCAAAAAAGTAGGGCATTTCAAGGTCCCACTGAGTCATTGGCCGCTAGTCTACAAAGAGGTTTGGATATCATTGACTACCACCAGAAAAATTCAGCATTGAACAAATCTTTGGTTTCCTTCTCCTTTGAGCACCTGGCACGGAAAACTGGCCCGGCAGCCCCAACGACAGATTCTTTGACTTTTGAAGATGTAAATTCATCTGTTAATGGACCATCCTCTTACCTCTGTGCATCTTGCCGAATGAGAATACATAAAACGGAAACAGGTGATATTCAGAATAACTCAAAACTCCCATTGGCATTGATCAATGAAACTGAACATGGTCAAGAGAATGACAATACTAGTCTTGGGGGATCGACCAAAAAACTTACACCACCTGAGGAGCCCCAAAGCAACGAGAAGTGCAATCCTGTGGAGAATCATCAAGTTGACATTGTAACTGATGTATGTGAGATTAAAGAAGAGCCCAATCTTGAGAATCAGAGTGGATTCGCTGATGTGAATGAGAAGGAAGCACTTCTAAAGGAAATTCAAAGTTTGAAGAGCAAGCTTCAGTCATTTCCAGTTTGCTCATCTGATGTGTCTGTTCAAAAGTCTGCTGACAAGATGAGATCGTCATTGTTGGCCCGCTCCATTCAACTAAGAAAAAGTGGTCTAGATTTCAAAGAAATCAGTGAGGAAGAACTGGAGAAAGAAAGAGAGAGATGGATGGAAATGGAGAGTGATTGGATATCCTTAACTGACGAACTGAGAATCGATCTCGAATCGAGTCGACGACGTGCAGAGAAGCTGGAGATGGAGTTGAGGTTGGAAAAAATGTGCAAGGAGGAGTTGGAGGATGTAATTCAGAGAGCCGTTCTTGGCCATGCGAGAATTATCGAGCACTACGCCGAATTACAAGAAAAATACAACGAATTGGTCGAAAAGCATCGAGTCGTAATGGAAGGTATAGAAGAGTTCAAAAGAGCTGCAGAGAAGGCCAGATCCAAAGGCCATGGATCTCGTTTTGCCAAATGTCTAACGGCCGAGCTTTCGGCAGTTAGAAGACAGAGGGAGAGGGAGAGAGAATTCCTGAAAAAGGAGAACAAAAGCCTGAGAATTCAACTCAGAGACACTGCAGAAGCCGTCCACGCTGCCGGAGAACTCCTCGCTCGGCTGAGAGAAGCAGAGCAATCAACACTAGCTGCAGAGGAGAACGTTTCAAGGGTAGAGCAAGAAAATGAGAAGTTGAAGAAGCAAATGGAGAAACTGAAAGCAAAGCACAAGACGGAGATGGCTACGATGAAGCAGTATCTTGCAGATAGCAGGCTGCCTGCATCTGCAATACAACCTACGTATAGAGAAGAGTCGGAAATAGTCGAAGAAACCGAAGAAGATCAAGCATGGAGAGCAGAGTTTAGAGCTGTATATCGAGATCATTATTGA 3918 42.19 MESDLGKLFIGGISWDTDEERLKEYFRRYGEVVEAVIMRDRATGRARGFGFLIFADPSVAERVILEKHVIDGRTVEAKKAVPKEDQHISSKNSGSINGSPAPARTKKIFVGGLASTVTESDFKRYFDQFGSITDVVVMYDHNTQRPRGFGFITFESEEIVDRVLHKTFHELYGKMVEVKIAVPKELSRGPNRSALGATNIASPGGFGIRMDRFSPTSNIPSGFSTFGNPNYGNGRNANFGSKIGSGQTMSAYYNGNPGRYTTPIGFNGGIGVIVRIRSANEEKRQGDLKVRKLSSDTLSILEREFAFDHVFDSESKQDDIFQLVGIPLVKNALGGYNTSILSCGQTGTGKTYTMWGPPSAMVEDISPASSQGIVPRILKMLFSEIQKEHENSEKKQINYQCRCSFLEVYNEQIGDLLDPTQRNLEIRDDAKSGLYIENLTEEYLTSYEDVIQILIKGLSSRKVGATTVNSKSSRSHVMFNFIIESWSKGNSTSFGSSKTSRVSFIDLAGLDRNLKDDVDRKCSRDAKNLKKSLSRLGHLVNTLSNETRCGKAEDSLYKSSSLTRLLRDSLGGNAKLTVICAISPDKKYITETLKTLRFGQRLKCIKNIPVINEITEDDVNDLSDQIRKLKEELIRAKSSSCNSSMGSLNGYFQGQNVRESLNQLRLSLNRSLILPGMGGNDDKHVNFAEQDVKELHQQLHELNISIDSIAKRDSLEFSSAGESFETDSVSDDDDVNSPEEETDKPQNDTTESLYCVSSETVTSKSIETMIRSSLSINSGCRSPILEDPPLSESPKIGRSLRKSMAISSSLSLCHSDMSESSKLKNDESTQLQKSRAFQGPTESLAASLQRGLDIIDYHQKNSALNKSLVSFSFEHLARKTGPAAPTTDSLTFEDVNSSVNGPSSYLCASCRMRIHKTETGDIQNNSKLPLALINETEHGQENDNTSLGGSTKKLTPPEEPQSNEKCNPVENHQVDIVTDVCEIKEEPNLENQSGFADVNEKEALLKEIQSLKSKLQSFPVCSSDVSVQKSADKMRSSLLARSIQLRKSGLDFKEISEEELEKERERWMEMESDWISLTDELRIDLESSRRRAEKLEMELRLEKMCKEELEDVIQRAVLGHARIIEHYAELQEKYNELVEKHRVVMEGIEEFKRAAEKARSKGHGSRFAKCLTAELSAVRRQREREREFLKKENKSLRIQLRDTAEAVHAAGELLARLREAEQSTLAAEENVSRVEQENEKLKKQMEKLKAKHKTEMATMKQYLADSRLPASAIQPTYREESEIVEETEEDQAWRAEFRAVYRDHY 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40545553 40555696 - Bda009494.1 Bda12g00948 17963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00948 1305 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bda12g00948 1305 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bda12g00948 1305 PANTHER KINESIN-LIKE PROTEIN KIN-12F 933 1305 - -
Bda12g00948 1305 PANTHER KINESIN-LIKE PROTEIN KIN-12F 255 938 - -
Bda12g00948 1305 SUPERFAMILY RNA-binding domain, RBD 4 97 IPR035979 GO:0003676
Bda12g00948 1305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 185 IPR000504 GO:0003723
Bda12g00948 1305 PRINTS Kinesin heavy chain signature 335 356 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda12g00948 1305 PRINTS Kinesin heavy chain signature 555 576 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda12g00948 1305 PRINTS Kinesin heavy chain signature 501 519 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda12g00948 1305 PRINTS Kinesin heavy chain signature 466 483 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda12g00948 1305 Gene3D - 103 192 IPR012677 -
Bda12g00948 1305 Pfam Kinesin motor domain 289 604 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda12g00948 1305 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Bda12g00948 1305 PANTHER CENTROMERE PROTEIN E 933 1305 - -
Bda12g00948 1305 PANTHER CENTROMERE PROTEIN E 255 938 - -
Bda12g00948 1305 Coils Coil 1053 1073 - -
Bda12g00948 1305 MobiDBLite consensus disorder prediction 719 755 - -
Bda12g00948 1305 Gene3D - 6 88 IPR012677 -
Bda12g00948 1305 Coils Coil 1078 1112 - -
Bda12g00948 1305 Coils Coil 1120 1140 - -
Bda12g00948 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 637 IPR027417 -
Bda12g00948 1305 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bda12g00948 1305 SMART kinesin_4 267 613 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda12g00948 1305 MobiDBLite consensus disorder prediction 81 100 - -
Bda12g00948 1305 Gene3D Kinesin motor domain 266 645 IPR036961 -
Bda12g00948 1305 Coils Coil 612 639 - -
Bda12g00948 1305 SUPERFAMILY RNA-binding domain, RBD 99 205 IPR035979 GO:0003676
Bda12g00948 1305 MobiDBLite consensus disorder prediction 938 968 - -
Bda12g00948 1305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Bda12g00948 1305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Bda12g00948 1305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bda12g00948 1305 Coils Coil 685 712 - -
Bda12g00948 1305 Coils Coil 1179 1206 - -
Bda12g00948 1305 Coils Coil 1217 1258 - -
Bda12g00948 1305 ProSiteProfiles Kinesin motor domain profile. 269 605 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00948 K10400 KIF15; kinesin family member 15 - zju:107404259 1051.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00687 Bda12g00948 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00948 Bda-Chr12:40545553 Bda14g00679 Bda-Chr14:5080148 5.06E-97 dispersed
Bda05g00688 Bda-Chr5:55183225 Bda12g00948 Bda-Chr12:40545553 0 transposed
Bda11g00439 Bda-Chr11:4658516 Bda12g00948 Bda-Chr12:40545553 7.27E-08 transposed
Bda12g00446 Bda-Chr12:5543197 Bda12g00948 Bda-Chr12:40545553 4.85E-06 transposed
Bda12g00975 Bda-Chr12:40906127 Bda12g00948 Bda-Chr12:40545553 2.59E-14 transposed
Bda12g00948 Bda-Chr12:40545553 Bda15g00983 Bda-Chr15:18247149 4.96E-93 wgd
Bda12g00948 Bda-Chr12:40545553 Bda05g00687 Bda-Chr5:55176861 2.40E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00948 Bda_Chr12 FPKM 1.759015 2.399274 6.253485 6.069689 7.309653 6.537989 7.778409 7.543296 7.747729