Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00951 ATGGACTCTTCTGATGCTCACTCCGACCAGAATCGAATTTCAGACGGCGATGTGCCCGGAGATCCGAATCGGGTTGAGTTTCAGGATAGCTCTGAAACTCGCTCTAGTCTTGTAGGCGGCGCTAGGTATAAGCTGATGTCTCCGGCGAAGCTTCCGATCTCTAGGGCTACTTGCATTACGATCCCACCCGGGCTTAGCCCTAGTTCATTTTTGGAGTCTCCGGCAGAGCCTTCTCCTACAACTGGAACCTTTATAAAGTCTCATATGGTTCATGGCTATTCCAGTTCAGGAACATATCCAATTTCCACATCGGTTTTCTCAAATTTAGGCATCTCCGAAGAAGGGAAAGCCAGCGTCTTTGACTTTAAGCCCCCTATAAAAGCAAATATGGTCTCTGCAGATATCAATGGCCATAGAAGTGAACAATCTGTCCAAGTCCAAGTTTATGGTGAGGTTTTCTCTCTCTACCCCATAATTAGTATAACGATCGGTCTTCTTAAGTTCAATGAGTCTCTCGGCCCTGATCACATGGTCATTGCAGGGTTTAGTGCTCCTGCTGAGTTCACCGGCAATGATGTTAATCAGAGACTCCTCAACAATCCAGAAGTTCAAGCCACAGAGTTTGATCATAAAGGAAGTGGGGCTTCAATGGCTGCCGAGAGGTCATCTGATGATGGATATAATTGGCGAAAATATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTACAAATGTACTCATCCTAACTGTGAAGTGAAAAAGTTGTTTGAACGCTCTCATGATGGACAAATAACCGAGATTATCTACAAGGGAACCCATGATCATCCTAAACCTCAGCCAAGTCGACGATGTACATCTTCTAACATTATGTCCATGCAAGAAGAAAAACTTGATAAGCCCACATCTTTATCTGGACAAGATGACAAACCCACTAACAGGTACTGTCATAATTTTCATGCTGCCGATCCAAATGTTGCTTCAGAGCATTCTCTTGTCGTAGCTACTGATGACAGTATTGAAGGCTCTGGTTCTCTGTCAAACAAGAACCACGATGAAGCAGATGATGACGATCCTTTCTCCAAGAAAAGCAGGAGAATGGAAGCTGGTGGATTTGAAGTAACTCCAGTTATTAAGCCCACACGGGAACCACGGGTAGTTGTTCAAACTTTGAGTGAGGTCGATATACTCGATGATGGCTACCGCTGGCGCAAATACGGGCAGAAAGTAGTTAGAGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACAAACGTCGGATGTCCTGTGAGAAAACATGTGGAAAGGGCATCTCACGACCCAAAAGCTGTGATAACCACGTATGAAGGTAAACACAATCATGATGTTCCGACAGCAAAATCTAGCAGCCACGACACAGCCAGTCCACCTTCGATGGCATGCCCATCCAAGTTTAGAGCGGAAGAAGTTCATGCCATTAGCCTCGATCTAGGAGTTGGTATTAGCAATCCCACGGAGAATAGATCGAACGACTACGGCCAGACGGGTCAATATGAGCTTTCCCATCGTCAAACTCTAAACGGCAGTTCCAACTTTCGGGTAGTTCAAGCAACCCCTGTCTCTACACATTTCAGTGTTCTAAATGGTGGTATAAGTCAATATGGATCTAGAGAAAATGAGATCACTCCTTTGAACCATTCTTCATACCCTTATCCTCAGAATATTGGAAGAATATTGACTGGTCCGTGA 1737 44.67 MDSSDAHSDQNRISDGDVPGDPNRVEFQDSSETRSSLVGGARYKLMSPAKLPISRATCITIPPGLSPSSFLESPAEPSPTTGTFIKSHMVHGYSSSGTYPISTSVFSNLGISEEGKASVFDFKPPIKANMVSADINGHRSEQSVQVQVYGEVFSLYPIISITIGLLKFNESLGPDHMVIAGFSAPAEFTGNDVNQRLLNNPEVQATEFDHKGSGASMAAERSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRCTSSNIMSMQEEKLDKPTSLSGQDDKPTNRYCHNFHAADPNVASEHSLVVATDDSIEGSGSLSNKNHDEADDDDPFSKKSRRMEAGGFEVTPVIKPTREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKSSSHDTASPPSMACPSKFRAEEVHAISLDLGVGISNPTENRSNDYGQTGQYELSHRQTLNGSSNFRVVQATPVSTHFSVLNGGISQYGSRENEITPLNHSSYPYPQNIGRILTGP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40590110 40593752 + Bda009498.2 Bda12g00951 17966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00951 578 MobiDBLite consensus disorder prediction 1 35 - -
Bda12g00951 578 Gene3D WRKY domain 213 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 ProSiteProfiles WRKY domain profile. 218 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 30 556 - -
Bda12g00951 578 Gene3D WRKY domain 387 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 SUPERFAMILY WRKY DNA-binding domain 221 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 MobiDBLite consensus disorder prediction 342 367 - -
Bda12g00951 578 MobiDBLite consensus disorder prediction 298 318 - -
Bda12g00951 578 MobiDBLite consensus disorder prediction 455 475 - -
Bda12g00951 578 MobiDBLite consensus disorder prediction 351 367 - -
Bda12g00951 578 MobiDBLite consensus disorder prediction 298 315 - -
Bda12g00951 578 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda12g00951 578 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 556 IPR044810 GO:0003700
Bda12g00951 578 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00883 Bda-Chr2:49193214 Bda12g00951 Bda-Chr12:40590110 2.44E-88 dispersed
Bda07g01335 Bda-Chr7:16108565 Bda12g00951 Bda-Chr12:40590110 1.13E-85 dispersed
Bda09g01561 Bda-Chr9:47169033 Bda12g00951 Bda-Chr12:40590110 3.29E-93 dispersed
Bda12g00175 Bda-Chr12:1652777 Bda12g00951 Bda-Chr12:40590110 7.61E-81 dispersed
Bda12g00992 Bda-Chr12:41247437 Bda12g00951 Bda-Chr12:40590110 1.47E-14 dispersed
Bda01g01087 Bda-Chr1:45596473 Bda12g00951 Bda-Chr12:40590110 1.53E-77 transposed
Bda01g01334 Bda-Chr1:49023935 Bda12g00951 Bda-Chr12:40590110 7.18E-13 transposed
Bda05g00686 Bda-Chr5:55156697 Bda12g00951 Bda-Chr12:40590110 1.08E-39 transposed
Bda09g00897 Bda-Chr9:25106065 Bda12g00951 Bda-Chr12:40590110 5.60E-50 transposed
Bda12g00951 Bda-Chr12:40590110 Bda05g00685 Bda-Chr5:55155254 1.48E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16818 PF03106 WRKY 3.30E-25 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00951 - - qsu:112006109 697.197