Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda12g00954 ATGATGGATTTATCAGAGTATACGAGAGTTGTATTCAATCGAATACAGAAGATAGAACCGAAAGAAGTTCGAAAAATCATCGGCTATCTTCTTCTTCAAGATCACGGCGACGAACAAATCGTCCGACTGGCCTGCGGGTCGGAGCAATCCATCCGTGAAGTCATTTACAAAGCTAAAATGGAGCTTCAAATTCCGGCCTCCTCCCCTCCGATATCGCCTTCCGTTCCCGTCTTATCTCCGTTGTCGCGGCGAACTTCCCAGCCGGTTTCGTCCTCTCCCTATTGGGAGCCGCTGATGAATCAGAATCCAGATTTTTCACCATCTGGATTGAATGATTCTTTCTCTGACATCCTAAACCAGACTCAGTTCTTGAGTTTAGATGATCAAATCGAACCGTTCGGGTTGAGTTTCTCGAACGATTCGTATTTTAGTTTGAGTTCTAGAAGGCGATTTGCGGATATGCCTGTCAAAACTTGCCATTTTTTTAACAAGGGATTCTGCAGGCATGGAAATAGTTGCAAGTTCTTCCACGGCCAGTCAAATTCGGAGAATTTCTCTCAAATTTACGGGTATAACGAAGATCATATGTTCTTGCCCGGATCGCTCGAGAAGTTAGAGATTGAAATCGTCGATCTGTTGAAATCGAGGAAAGGAAATCCGATTTCTATCGCATCTTTGCCGATGATTTACTACGAACGATATGGAAAAGTTCTTCAGGCTGAGGGGTATCTCACCGAGAGCCAAAGGCACGGCAAAGCCGGTTATAGTTTGACGAAACTCCTTGCTCGGTTGAGAAATTCGATCCGTCTGATTGACCGACCTCATGGACAACATGCTGTGATCTTAACAGAAGATATTCCTACCTTCATGGAAAATCGAAATGAAAAGAATGATCCCGGCCCGATCGTGAATGGATCGCGGCAGATATATCTCACATTTCCGGCTGACAGCACGTTTTCAGAAGACGATGTTTCAAATTACTTTGAGTAA 990 44.34 MMDLSEYTRVVFNRIQKIEPKEVRKIIGYLLLQDHGDEQIVRLACGSEQSIREVIYKAKMELQIPASSPPISPSVPVLSPLSRRTSQPVSSSPYWEPLMNQNPDFSPSGLNDSFSDILNQTQFLSLDDQIEPFGLSFSNDSYFSLSSRRRFADMPVKTCHFFNKGFCRHGNSCKFFHGQSNSENFSQIYGYNEDHMFLPGSLEKLEIEIVDLLKSRKGNPISIASLPMIYYERYGKVLQAEGYLTESQRHGKAGYSLTKLLARLRNSIRLIDRPHGQHAVILTEDIPTFMENRNEKNDPGPIVNGSRQIYLTFPADSTFSEDDVSNYFE 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40604724 40605797 - Bda009501.1 Bda12g00954 17969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda12g00954 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 179 IPR000571 GO:0046872
Bda12g00954 329 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 2 329 - -
Bda12g00954 329 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Bda12g00954 329 Pfam OST-HTH/LOTUS domain 201 279 IPR025605 -
Bda12g00954 329 ProSiteProfiles OST-type HTH domain profile. 201 284 IPR025605 -
Bda12g00954 329 SUPERFAMILY CCCH zinc finger 154 178 IPR036855 GO:0046872
Bda12g00954 329 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 2 329 - -
Bda12g00954 329 Gene3D - 152 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda12g00954 - - - jre:108985070 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00419 Bda-Chr6:6303120 Bda12g00954 Bda-Chr12:40604724 1.66E-107 dispersed
Bda12g00954 Bda-Chr12:40604724 Bda14g00452 Bda-Chr14:3249979 1.96E-12 dispersed
Bda12g00954 Bda-Chr12:40604724 Bda09g01336 Bda-Chr9:45117470 7.02E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16820 PF12872 OST-HTH 8.50E-13 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda12g00954 Bda_Chr12 FPKM 25.615606 26.181955 41.579441 39.628963 23.511873 23.734386 25.697374 12.914405 13.913594